Search Results for "strain analysis"
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Showing 18 open source projects for "strain analysis"
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Basic features: 1. Generate KPOINTS, POTCAR and INCAR for a given POSCAR file; 2. Elastic-constants using stress-strain or energy-strain methods; 3. Equation-of-state fitting; 4. Suggested k-paths for a given crystal structure; 5. Optical adsorption coefficient; 6. Band structure unfolding; 7. Fermi surface; 8. Density-of-states and band-structure; 9. Charge/spin density, Charge density difference; 10. Vacuum level and work function; 11. Wave-function analysis; 12. Molecular...
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Thick-Wall Composite PV
Stress-Strain analysis of thick-wall composite cylindrical PV
TWOPV.xlsm is a macro enabled Excel workbook for calculating stress and strain in a thick-wall cylindrical pressure vessel under external hydrostatic pressure. Vessel walls are a special case orthogonal composite laminate having a 2:1 ratio of circumferential to longitudinal oriented laminae. Inputs are: 1) unidirectional composite (UDC) properties, 2) cylinder radii and 3) pressure. Documentation and examples are included. -
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VOX-FE
Voxel-based Finite Element Analysis for Biomechanical Applications
VOX-FE is voxel-based FE software, developed jointly between the University of Hull's Medical & Biological Engineering Research Group and Edinburgh Parallel Computing Centre, with a sophisticated graphical user interface that allows the complex loading regimes that are inevitably present in biomechanical analyses to be readily applied to the model geometry, and the resultant 3D stress and strain patterns to be visualized easily. In addition to the introduction above, several example videos... -
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misc genomics tools
Various scripts used in sequencing, annotation and RNAseq analysis
This is a collection of various programs developed in the course of a genomics project, involving the Pseudomonas strain NCIMB10586 These include * identifying and correcting errors in an (eg) pacbio genome sequence using illumina reads * prokaryotic sequence/genome annotation * RNAseq analysis - normalisation and collation of multiple samples as a group * RNAseq visualisation All scripts are provided on a 'best efforts' basis, however due to various system changes I do not guarantee... -
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
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OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets.
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Panacea
PAN And Core-gEnome Analysis
A tool to calculate the Pan-Genome of a set of annotated genomes -
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X-SOCS
X-ray Strain Orientation Calculation Software
The X-ray Strain Orientation Calculation Software (X-SOCS) is a user-friendly software, developed for automatic analysisof 5D sets of data recorded during continuous mapping measurements. X-SOCS aims at retrieving strain and tilt maps of nanostructures, films, surfaces or even embedded structures. For more information: http://scripts.iucr.org/cgi-bin/paper?S1600576714004506 To download the latest version of XSOCS (D. Naudet, T. Vincent, M.I. Richard, G. Chahine), follow the instruction... -
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PanCGP
PanCGP: Pangenome and Comparative Genome Analysis Pipeline tool
..., unique/strain-specific genes/proteins, new gene/protein families and total number of genes per strain of the specie. It also extracts the corresponding protein sequences against pan-genome, core protein and dispensable protein sequences in separate FASTA formatted text files. The tabular text format can be used to render the final results in the form of visual graphs representing the trends in gene/protein sequence analysis. -
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matgts
programs for geotechnical engineering and mathematics
Computational software for geotechnical engineering and mathematics: https://sourceforge.net/projects/matgts/files/ mtfem - finite element analysis, 2D, plane strain state (C, SDL); mtpile - analysis of a laterally loaded pile (C, SDL); mtslope - slope stability and displacement analysis using limit equilibrium (C,SDL); jswall - analysis of a diaphragm wall (JavaScript); jsmath - mathematics: polynomial equations, linear systems of equations, eigenvalues, matrix multiplication... -
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GeoStrain
Geodynamic strain analysis software
The main purpose of the software is to calculate the crustal strain rates using the least-squares collocation method. The software is able to simultaneously determine the signal and noise of the velocities at the observation points with the best possible removal of the observation errors, or at any other position with no velocity observation. Furthermore, the software can calculate strain and rotation rate tensors at points of interest, including observation points, grid points or points along... -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
...-defining polymorphism. This functionality has been implemented using the tabix tool on the server side, providing simple and rapid access to the information at each tree node, including informative SNPs stored in VCF-similar files. These informative variants have been established by comparing allele frequencies between strain-types using ancestral node comparisons and FST measures of population differentiation. -
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YAFEMS
Yet Another Finite Element Method Solver
YAFEMS (Yet Another Finite Element Method Solver) is a FEM solver for Linux and WIndows that reads a MED mesh file produced by Salome (http://www.salome-platform.org/) with certain groups created into the mesh, and with the help of an input text file (.yaf), performs a 3D or 2D plane stress or plane strain analysis and creates results in plain text format and in MED format. This way a complete analysis can be carried inside Salome, where a mesh file can be created, exported and read... -
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SIGMA
Strain-level Identification of Genomes from Metagenomic Analysis
SIGMA, a precise strain level genome identification and abundance estimation tool for metagenomic biosurveillance. -
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fesslix
Stochastic Analysis
A brief summary of the main features of Fesslix: - Perform non-intrusive reliability analysis or Bayesian updating either --- by running commands on the command line or --- by means of an Octave interface or --- by means of a Python interface - Flexible input language for writing Fesslix parameter files --- Control flow statements (e.g. if, for, while) --- Most parameters can be defined as functions - Working with response surfaces - Linear finite element analysis using truss, beam... -
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sysbio_ecoli_modeling
Mathematical modeling of E. coli carbohydrate uptake and metabolism
Metabolism and signalling are tightly coupled in bacteria. Combinig several theoretical approaches a core model is presented that describes transcriptional and allosteric control of glycolysis in Escherichia coli. Experimental data based on microarrays, signalling components and extracellular metabolites are used to estimate kinetic parameters. A newly designed strain was used that adjusts the incoming glucose flux into the system and allows a kinetic analysis. Based on the results... -
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SailFEM is a Matlab code for the finite element analysis of membrane elements. The code was developped for the application in sail analysis. Implemented elements are the non-linear Constant Strain Triangles.
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StrATo (Strain Analysis Tool) loads GE Vingmed heart strain value reports file and performs a statistical peak analysis and curve uniformity evaluation, cutting off sampled noise, plotting results and offering a printout to attach in medical reports.
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