PanCGP

Pan-genome and Comparative Genome analysis Pipeline tool is a high performance parallel computing analysis tool. The aim of developing this high performance and scalable pipeline is to reduce the time cost of calculating the pan-genomes from the given dataset of protein sequences of bacterial strains. The pipeline is able to compute pan-genome analysis from unpublished data-sets as well.
Those results are interpreted in the form of pan-genome, core genome/proteins, dispensable genes/proteins, unique/strain-specific genes/proteins, new gene/protein families and total number of genes per strain of the specie. It also extracts the corresponding protein sequences against pan-genome, core protein and dispensable protein sequences in separate FASTA formatted text files. The tabular text format can be used to render the final results in the form of visual graphs representing
the trends in gene/protein sequence analysis.