Search Results for "c# vcf"
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Showing 20 open source projects for "c# vcf"
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vcard program vCardz_i
VCF vcard, XML xcard, JSON jcard;View, Edit, Convert, Export, CSV, QR
vCardz_i supports VCF, XML and JSON vcards; View, Create, Edit, Extract, Convert, Import CSV, TAB or |, Export CSV, Excel® .xlsx, TXT or ODS spreadsheet. Create vcard QR code images, in MEcard, vCard or xCard format., or create your own QR from your text entry. Voice output of selected data or a complete address. Create multiple Themes to easily switch appearance. Free multifunction vcard address book program to handle multilingual VCF, XML and JSON vcard files. Use the same... -
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vcparse
A simplistic C++ VCF/VCARD parser
This single-file project transcodes VCF/VCARD files into JSON for easy filtering with grep. VCARD support is incomplete but can be extended. This project was motivated from recovering contacts backed up from an Android phone in a human-readable yet machine-friendly format. -
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crossmap
convert genome coordinates betweeen assemblies
CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format. -
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mod_psldap
Apache LDAP Directory Manager
mod_psldap is an Apache module for leveraging LDAP services built on the OpenLDAP library and the Apache APIs, to include web based A&A, web based updates to the LDAP store, server-side XSLT processing, and session management across servers. -
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by... -
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QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
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VCF Reader
A tool that enables users select and view contact details from a vCard
A tool that enables users select and view contact details from a vCard (.vcf) format. It also has search functionality and remembers your last viewed file. -
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VCF Explorer
A desktop application for analyzing whole genome VCF files
he decreasing cost high-throughput technologies led to a number of sequencing projects consisting thousands of whole genomes. The paradigm shift from exome to whole genome brings a significant increase in the size of output files. Most of the existing tools which are developed to analyze exome files are not adequate for large VCF files produced by whole genome studies. In this work we present VCF-Explorer, a variant analysis software capable of handling large files. Efficient memory... -
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denovo_hit
Outputs potential denovo variants from VCF given pedigree information.
Program takes variants calls and determines if the call is novel for a child compared to parents. Program can handle both annotated and unannotated VCF files, however output file is not compatible with GATK's snpEff, so you should annotate prior to using denovo_hit. Usage: ./denovo_hit <VCF file> <PED file> Output: ./potential_denovo.txt To compile: g++ -std=c++11 denovo_hit.cpp -o denovo_hit Please see files for example VCF file, and pedigree file. Format VCF file (tab delimited): CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, FORMAT, SAMPLE_ID, ... ... -
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The Visual Component Framework is intended as a cross platform class library, that supports, among other things, an advanced GUI framework strongly influenced by Borland's Visual Component Library and Java's Swing framework.
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A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/
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VCFSplitter
Splits combined VCF to individual VCF files
This software shall help you to split your single vcf file which has multiple vcf entries to individual VCF files. -
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rcard
ncurses VCard 3.0 contact management editor
A vcard 3.0 contact management editor developed for ncurses. It can: - load a vcf file - show all the contacts in a list - show more information about a single contact - perform a simple search in the contacts list - edit contacts - support UTF-8 (currently not on WIN32, though I'm not sure WIN32 console is actually able to support UTF-8) - convert the VCF(s) to Pine/Alpine addressbook format - import images from files as contacts photos The idea is based upon rolo (which you... -
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ligth-genome-view
small genome viewer local wxWidget c++
a small genome viewer program based on wxWidget. I am a newbie in bioinformatics. Hope this will give people help when build bio-GUI project using c++. This software is used to view genome including many type files,like bed,gff,gtf,vcf,fasta,bam. -
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Super-Alias Virtual Digital
Super-Alias Virtual Digital: simulation of digital audio artefacts
Super-Alias Virtual Digital: Simulation of artefacts in legacy digital audio equipment. Includes the following modules: variable quantization, vari-speed, variable re-sampling and aliasing, aperture, jitter, brick-wall band-pass filtering, and VCF. Copyright (c) 2008-2013 by Klaus Michael Indlekofer. All rights reserved. Note: Special restrictions apply. See disclaimers below and within the distribution. (We are not affiliated in any way with companies/persons mentioned above. All brand names and trademarks are property of their respective owners.) -
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vcf2csv
(abandoned and outdated project) convert vcard data into csv format
vcf2csv is a command line tool, written in ANSI-C (C90), converts a vcard (vcf) file to csv. Please note: the ability to generate HTML-files will be removed in the near future. -
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Android-icloud-converter
конвертер контактов из андроида в iCloud
После выгрузки контактов из телефона на флеш-карту, чтобы их можно было загрузить в книгу контактов windows или iCloud необходима конвертация. Для этого и создана эта программа. -
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The VCF Builder is an advanced development tool for creating C++ applications, and supporting a wide number of plugins for enhancing it's functionality. While the VCF Builder is capable of creating generic C++ applications, it's forte is building GUI ap
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A command line utility for searching vCard (version 3.0) files which hold multiple contacts. The goal it to provide the user a convenient and easy to use means of accessing personal contact information, particularly phone numbers, in a desktop setting.
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