Search Results for "reference" - Page 57
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Showing 2124 open source projects for "reference"
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Free Tiger
Free fast implementation of tiger and the TTH algorithms
Free Tiger aims to provide a fast C implementation of the tiger and TTH hash algorithms in order to provide a performing hasher. It also aims to provide pure implementations of tiger and when possible TTH in other languages for reference. -
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PPSeq: Parallel NGS Analysis
Parallel Processing for Next-Generation Sequencing (NGS) Analysis
High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive... -
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Cloud Data
Cloud Data connects to free web storage as database
Cloud Data separates the data before saving the individual pieces to different online storage accounts and indexing the reference such that the data can be retrieved, merged and removed. Add in more storage accounts to the pool through a configuration file. Cloud Data opens up options for those who wants to have more capacity than the online storage limits, centralised data management, etc. Cloud Data connects to free web storage as database by using the Google Spreadsheet service. ... -
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Hierachical_DNAcoder
An Hierachical Approach to Multi-Reference Genome compression
The storage and data transferring of large genome data are becoming important concerns for biomedical researchers. We present a novel multi-reference based genome compression method with a hierachical structure. Our approach works for the de facto standard alignment format (i.e., BAM) compression that is the pressing need at present. We align new sequences to a reference sequence using SOAP3, a GPU-based aligning software, and summarize mapping properties and information for exact mapped reads. ... -
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DNAcompact
Genome compression algorithm with/without reference (Linux/Windows)
...We propose a two pass genome compression algorithm, which highlights the synthesis of complementary contextual models and the introduction of logistic regression mixture method, to improve the compression performance. The proposed framework handles genome compression with and without reference seque- nces, and demonstrated performance advantage over the best existing algorithms. The proposed method without a reference led to bit rates of 1.720 and 1.838 bits per base for bacteria and yeast, which are approximately 3.7% and 2.6% better than the state-of-the-art algorithm. Regarding performance with reference, we tested on the first Korean personal genome sequence data set, and the proposed method demonstrated a 189-fold compression rate, reducing the raw file size from 2986.8 MB to 15.8 MB. -
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VN Travian Clone, maded by various people, it has some bugs, but its relatively the best avaliable T3 clone. You have to setup and use! There is a reference readme in the package, but you will need to figure it out! The README file is in the package or here in SF unfer Files menu
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ECLCAnnualTruckShowMgr
Truck Show Manager
Application for controlling a Truck Show, Voting, Sales, Expenses and Vendor plotting. Written in Java . -
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WSN Localisation
Localisation system in wireless sensor networks using ns-2
...Hancke, GP., “ns-2 extension to simulate localization system in wireless sensor networks,” In Proceedings of the IEEE Africon 2011 conference, 13-15 September , Livingstone, Zambia, 2011, pp. 01-07. [2] A. M. Abu-Mahfouz "Accurate and efficient localisation in wireless sensor networks using a best-reference selection," PhD thesis, 2011, http://upetd.up.ac.za/thesis/available/etd-10122011-124534/ For ns-2.34: download ns2_localisation.tar.gz For ns-2.35: click on "Browse All Files" then read "readme.asn" -
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GOOD OLD AI Framework
AI Framework
GOOD OLD AI Framework, is Java AI framework which aims to provide task oriented artificial intelligence framework with set of interface specifications and reference implementations for common AI tasks, support reusability and interoperability among different AI components and other related frameworks. -
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Frost Programming Language
Frost Programming Language Interpreter
Frost is an interpreted structured programming language based on C and Objective-C. It has dynamically typed variables, named function parameters, implicit memory allocation, and automatic garbage collection through reference counting (for arrays). As any major interpreted language, you can easily create bindings of your C library functions to Frost. Its interpreter is written in C, and it only uses libC and POSIX system calls (Lex and Yacc are not required). You can easily compile it on Linux or OS X using the included Makefile. -
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ReviSTER (Revise Simple Tandem repeat Error Reads) is an automated pipeline using a “local mapping reference reconstruction method” to revise mismapped (mapped to incorrect position) or partially misaligned (mapped to correct position but one of ends misaligned) reads at STR loci.
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Freedom3D_GM
full-blown GTA 3 -SA clone. Done in Game Maker. No missions though
...Done in Game Maker. The game implements relistically the possibility to get in various vehicles and go around, jump (also on houses and ramps). This is a sort of reference that shows to also to the geenral public (so not only C/C++ programming nerds) how such a thing is made: vehicles on hilly terrain, obstacles, and collision with them... environment with optimised viewdistance and day/night cycle (so I mean atmosphere). -
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Higher Education Reference Ontology
HERO provides consensual knowledge model of university domain.
Since it is a Reference ontology, it has a broad and deep coverage of university domain, in other words, the ontology describes several aspects of university domain such as organizational structure, administration, staff, roles, incomes, etc. The purpose of this reference ontology is to be relevant or at least convenient to describe any university -
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ParaSim
Parallelized calculation of molecular similarities
...ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently queried datasets as persistant objects in memory for short response times. ParaSim calculates chemical similarities based on binary structural fingerprints. It does not compute fingerprints by itself but relies on third party software to do so. ... -
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primeScaff is intended to automate the sometimes tedious process of manually designing specific primer pairs around gaps of genomic scaffolds and speedup the genome finishing stage of a genome sequencing project. It incorporates de-novo repeat finding using RECON to avoid as much as possible designing primers in repetitive regions and offers the possibility to easily fine-tune the primer design options using primer3. It outputs the repeat, gap and primer annotations in gff2 and gff3 to...
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libmx
A framework for dealing with lambda calculus expressions.
...Among other features it provides o a template instantiation machine for evaluating the value of an lambda calculus expression, o a template instantiation machine for evaluating the Hindley-Milner type (http://en.wikipedia.org/wiki/Hindley-Milner) of an lambda calculus expression, and o reference counter based memory management for lambda calculus expressions and types. "libmx" is written in C (C99). -
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vehicle simulator 3D in GameMaker
simple 3D vehicle simulator done in GameMaker. Good control though
simple 3D vehicle simulator done in GameMaker. IT is as much as possible bug-free, and it works well. Camera control and vehicle control are implemented with great care. This program serves as a reference material and reliable example for 2 tasks in 3D videogames: *hilly terrain as basis of game's environment *vehicles realistically drivable on hilly terrain. The package contains the Windows (XP or campatible) executable, and the folder with the Game Maker project. Hope it will be useful for some. This project actually houses 2 zip packages...1 is a full-blown driving simulator, called Tractor Nerd 3D, and a sample program which implements a simple game in which the player controls a hero which can walk on a hilly terrain, where this terrain is defined throught a hightmap read froam an external bitmap image file and another bitmap which, according to some conventions,defines which texture is to be put at which little 'square' of the terrain, and a folder contraining the textures -
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Maestro Project
Maestro is a Rethought Virtual Metronome
Maestro is a free open source multiplatform virtual metronome, totally rethought to provide new functionalities to the user and a much better and easy-to-use interface. We know: there are lots of virtual metronomes, and many of them are also free software. However, there are no one like Maestro. Our professional team have produced a more ergonomic interface, powerfull but simple and easy. The inovative features were created in consonance with professional musicians and reflect their... -
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HSOC
Heterogeneous System-on-Chip Platform
...The target users are CS/EE professionals. Some experience with SoC design methodology and SystemC (e.g. reading the SystemC user manual and/or running the examples) is required. To reference this work: M.D. Grammatikakis, A. Papagrigoriou, P. Petrakis, and G. Kornaros, "Monitoring-aware VP prototypeof heterogeneous NoC-based multicore SoCs", Digital System Design Conf. (DSD), 2013, pp. 497-504. Available from http://doi.ieeecomputersociety.org/10.1109/DSD.2013.59 This research has been co-financed through the National Project Archimedes III and is co-financed by the EU project FP7-vIrtical. -
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OpenJSM C++ (new version)
A new version of my JSM implementation
... - An Eclipse project for quick development, which compiles JSM as an application, static library (.a) or dynamic library (.so) - All sources (in src/, which are .h and .cpp) - Already compiled libjsm.so and application (Debug/jsm) which could be execured with sample data (input.txt), log is saved into output.txt - Docs made by doxygen (/html/index.html) How to use: 1) Use it as a program - change main.cpp as you wish 2) Use it as a shared library - write #include "way_to_jsm/headers.h" in your file, and add reference to libopenjsm.so Changes since last (1.0) version (https://sourceforge.net/projects/openjsmcpp/): - Added new methods ("get properties of object" and "add sample as string") - Added possibility of .so compilation -
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MacLaunchpad
Lion's Launchpad on Leopard and Snow Leopard
...A System Preferences Pane lets you to set every feature of MacLaunchpad the way you want: custom keyboard shortcuts, custom screen corners behavior and even custom screen items amount. MacLaunchpad includes Uninstaller and a quick reference guide. Compatible with OS X 10.5.8 (Intel only) and 10.6.x. -
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The FETLAR project aims to release open source mathematical assessment systems and is the MSOR community's bid through the Subject Centre strand for the Open Educational Resources (OER). *** This project is now finished. If you are interested in QTI 2.1 delivery (as provided by MathAssessEngine, please see the new QTI Works project - https://sourceforge.net/projects/qtiworks/ ***
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Zilog eZ8 ASM programming tutorial
Zilog Z8 encore assembly programming
...XP microcontrollers to the homebrew electronics community. Hackers, makers and students should know about these capable chips. On our website you will find: Tutorials, Programmers Reference, Schematics and Dev utils for Z8 encore! microcontrollers and various webapps that will help you get the most out of your Zilog eZ8! -
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Entendre is a framework that enables syntactic and semantic analysis of inputs in relation to a reference ontology.
