PPSeq: Parallel NGS Analysis download

High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems.

Features

ppalgn - aligning sequencing reads to long reference sequences
ppbwt - building a FM-index from a set of DNA sequences

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Additional Project Details

Operating Systems

Linux

Intended Audience

Education, Engineering, Healthcare Industry, Information Technology, Non-Profit Organizations, Science/Research

User Interface

Command-line

Programming Language

C++

Related Categories

C++ Algorithms, C++ Genetic Algorithms, C++ Bio-Informatics Software

Registered

2013-09-30

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