Showing 2124 open source projects for "reference"

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  • 1
    An integrated pipeline for forensic analysis from SNP panel data. 1. SNP caller takes a FASTQ file and reference SNP panel as input and generates SNP calls. 2. Kinship analysis 3. Ancestry prediction 4. Data quality check 5. Replicate analysis 6. Mixture analysis module available by request
    Downloads: 0 This Week
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  • 2
    This C++ library adds reference-counting to user classes, as well as custom deleters and weak ptrs support. Thus it almost eliminates the need in tr1:shared_ptr. Wrapped objects could be used with tr1:intrusive_ptr or with this library smart pointers
    Downloads: 0 This Week
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  • 3
    Eddystone

    Eddystone

    Specification for Eddystone, an open beacon format from Google

    ...The standard includes unique identifier frames for asset tracking, telemetry frames for device health and battery, and a URL frame that points scanners directly to web content. A rotating, ephemeral identifier variant supports privacy-preserving deployments where beacons regularly change their broadcast identity. Reference code and documentation show how to craft frames, configure advertising intervals, and interpret signals on the receiver side. Eddystone helped catalyze “physical web” style experiences by making proximity signals easy to deploy and consume across ecosystems.
    Downloads: 0 This Week
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  • 4
    Bocker

    Bocker

    Docker implemented in around 100 lines of bash

    ...It is not intended for production use due to performance, security, and missing features, but it is a useful tool for learning how containers work under the hood. Many learners and educators reference it when teaching container internals or when debugging container behavior in a minimal environment.
    Downloads: 2 This Week
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  • 5

    CNVision

    CNV prediction from Illumina genotyping data

    ...CNVision was written to analyze data for the Simons Simplex Collection (SSC) autism data. A fill description of methods are given in the following paper which can be used to reference CNVision: http://www.ncbi.nlm.nih.gov/pubmed/21658581
    Downloads: 0 This Week
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  • 6

    Tardyon Drive AVR Stepper Controller

    AVR-based single axis stepper motor controller

    This project provides an AVR-based, USB accessible, single-axis motion controller that can fit into an USB-connector completely and therefore is probably the worlds smallest stepper motor controller. Here both, hardware schematics and all software components are provided.
    Downloads: 0 This Week
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  • 7
    This is the reference library for ICS (Image Cytometry Standard), an open standard for writing images of any dimensionality and data type to file, together with associated information regarding the recording equipment or recorded subject.
    Downloads: 0 This Week
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  • 8
    usda-data-dump

    usda-data-dump

    Take note of plain and c formats for postgressql (pg_restore)

    This is a collection of usda data dumps ready to use and to server as a reference point and data source. We at http://globalfoodbook.com already use this for generating and analysing nutrition facts. And we use this meduim to share and grow knoledge together.
    Downloads: 0 This Week
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  • 9
    dbis

    dbis

    DBIS Reference Implementation

    Reference implementation of Directory-Based Information Services, described in IETF Internet Drafts, intended to replace NIS and RFC2307.
    Downloads: 0 This Week
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  • 10
    Gulp-Cheatsheet

    Gulp-Cheatsheet

    A cheatsheet for gulp.js

    ...It includes multilingual PDF versions (English, Japanese, Chinese) so users around the world can use it in their preferred language. The repository is lightweight (mostly documentation and examples), licensed under MIT, and maintained as a community reference rather than a full tool or plugin.
    Downloads: 0 This Week
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  • 11

    BLAST to A-Bruijn graphs

    A-Bruijn graph builder given pair-wise alignment of a reference genome

    WE HAVE MOVE TO A GIT REPO. PLEASE GO TO: https://github.com/COL-IU/RepGraph This software is used to construct A-Bruijn graph given pair-wise alignment of a reference genome. This was developed for a journal article published in 2004: Pevzner, Paul A., Haixu Tang, and Glenn Tesler. "De novo repeat classification and fragment assembly." Genome research 14.9 (2004): 1786-1796. The original software was modified slightly to be used in conjunction with GRASPER ( https://github.com/COL-IU/GRASPER )
    Downloads: 0 This Week
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  • 12

    GRASPER

    Repetitive structural variation caller using short paired-end reads

    ...Please go to https://github.com/COL-IU/GRASPER GRASPER (Genome Rearrangement Analysis using Short Paired-End Reads) is a de novo structural variation (SV) calling software that is capable of detecting repetitive SVs. It constructs A-Bruijn graphs to capture approximate repeats within a reference genome then SVs are detected on the graphs. GRASPER requires a reference genome sequence in a FASTA formatted file along with a Illumina paired-end sequencing data of a sample genome.
    Downloads: 0 This Week
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  • 13
    The OVAL Interpreter is a freely available reference implementation that demonstrates the evaluation of OVAL Definitions. Based on a set of OVAL Definitions the interpreter collects system information, evaluates it, and generates a detailed OVAL Results file. Developed to demonstrate the usability of OVAL Definitions and to ensure correct syntax and adherence to the OVAL Schemas by definition writers, it is not a fully functional scanning tool nor an enterprise scanning tool. ...
    Downloads: 2 This Week
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  • 14
    Flexbar

    Flexbar

    flexible barcode and adapter removal for sequencing platforms

    ...Moreover, trimming and filtering features are provided. Flexbar supports next-generation sequencing data in fasta and fastq format, e.g. from the Illumina platform. Reference: Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich: Flexbar — flexible barcode and adapter processing for next-generation sequencing platforms. Biology 2012, 1(3):895-905.
    Downloads: 0 This Week
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  • 15
    Dungeon Crawl Stone Soup is a free rogue-like game of exploration and treasure-hunting. Stone Soup is a continuation of Linley's Dungeon Crawl. It is openly developed and invites participation from the Crawl community. See http://crawl.develz.org !
    Downloads: 7 This Week
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  • 16
    MassWiz

    MassWiz

    Proteomics MS/MS database search engine

    Open Source MS/MS algorithm with integrated target-decoy based FDR. Reference- http://pubs.acs.org/doi/abs/10.1021/pr200031z , Check out the wiki site for help and support - https://sourceforge.net/apps/mediawiki/masswiz/index.php?title=Main_Page
    Downloads: 0 This Week
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  • 17
    Squadra

    Squadra

    A set-square on your screen!

    News: Squadra can constrain the mouse pointer! A set-square that is displayed on top of any other program and provides a visual reference for drawing perpendicular lines, measuring angles and so on... See the screenshots for some examples of usage. IT: Novità: Squadra può vincolare il puntatore del mouse! Una squadra (da disegno) visibile sopra ogni altro programma che fornisce un riferimento visivo per disegnare linee perpendicolari, misurare angoli, ecc...
    Downloads: 0 This Week
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  • 18

    VBioindex

    A Visual Tool to Estimate Biodiversity

    ...We developed VBioindex, a user-friendly program, which is capable of measuring the Shannon-Wiener index, species richness, evenness, and relative dominance. VBioindex serves as an easy to use interface and visually represents the results in the form of a simple chart. Reference : D.S. Yu and S. H. Yoo, VBioindex: A Visual Tool to Estimate Biodiversity, Genomics Inform. 2015 Sep; 13(3): 90–92.
    Downloads: 0 This Week
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  • 19
    CANUSB Library written in C#
    ...This wrapper uses 'PInvoke' (like peek/poke) to 'martial' calls from managed to unmanaged code. It sounds complicated, and it is. IT IS ALSO TOTALLY UNNECESSARY. Why not have the DLL as managed code?? Why not simply reference the library in your project and just call its functions?? This project does just that Licence: LGPLV3.: In summary, the only thing we ask is if you improve / bugfix / extend the library then feed these changes back into the project by emailing jon_newcomb or requesting sourceforge access. Applications you develop that use this library are not covered by this licence and can remain closed source and commercial
    Downloads: 2 This Week
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  • 20
    The program oxref writes to the standard output stream a cross reference of symbols defined in unstripped object files and/or libraries. It demangles C++ symbols and can (probably) be used for a large range of languages.
    Downloads: 0 This Week
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  • 21

    FractalAnalyzer

    A GUI application for multifractal seismicity analysis of earthquakes.

    Reference: Roy, P. N. S. and Gupta, D. K., 2015, FractalAnalyzer: A MATLAB Application for Multifractal Seismicity Analysis, Seismological Research Letters, 86 (5).
    Downloads: 0 This Week
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  • 22
    rscss

    rscss

    Reasonable System for CSS Stylesheet Structure

    ...The guidelines cover folder structure, naming, and how to scope modifiers, which helps reduce churn when multiple contributors touch the same UI. Even if your team eventually adopts a utility framework or CSS-in-JS, rscss is a helpful reference for reasoning about class semantics and keeping styles tidy.
    Downloads: 0 This Week
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  • 23

    Informatica Create ctl

    automate Informatica control file creation

    ...Default settings for the control file can be overridden at the command line and works with both static and dynamic deployment groups in the repository. Please review the “Using the Deployment Control File” section in the Informatica Command Reference guide for further help on the deployment control file. This utility supports Informatica PowerCenter versions 8.6.1 onwards and Java 1.6\. This utility also contains JDBC drivers for DB2, SQL Server, Oracle, and Teradata databases.
    Downloads: 0 This Week
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  • 24
    EzXML Desktop
    The EzXML Desktop is a lightweight reference implementation for XML based solutions using the Eclipse RCP and Plug In Development Environment features. EzXML supports embedded HTTP/HTTPS URI and an embedded HTTP server with X.509 Certificate support.
    Downloads: 0 This Week
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  • 25
    S1000D Transformation Toolkit
    The S1000D Transformation Toolkit provides a reference implementation supporting the transformation, packaging and viewing of S1000D data into a SCORM 2004 3rd Edition Content Package, Mobile Web Application and PDF.
    Downloads: 1 This Week
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