GRASPER

WE HAVE MOVED TO A GIT REPO. Please go to

https://github.com/COL-IU/GRASPER


GRASPER (Genome Rearrangement Analysis using Short Paired-End Reads) is a de novo structural variation (SV) calling software that is capable of detecting repetitive SVs.

It constructs A-Bruijn graphs to capture approximate repeats within a reference genome then SVs are detected on the graphs.

GRASPER requires a reference genome sequence in a FASTA formatted file along with a Illumina paired-end sequencing data of a sample genome.