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CNVision

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CNV prediction from Illumina genotyping data

4.5 Stars (2)
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Description

CNVision is a Perl script that runs Illumina genotyping data (all chips from 300k to latest Omni) through PennCNV, QuantiSNPv2.3 and GNOSIS (an in-built algorithm). It merges the results and assesses the quality of the raw data. CNVision can also identify de novo CNVs in family-based data using a highly accurate algorithm that considers the possibility of CNVs in either parent based on the raw genotyping data.

The script is optimized to work in a UNIX-based environment; it should work in Windows, however running the PennCNV component gives errors with the newer versions of PennCNV.

CNVision was written to analyze data for the Simons Simplex Collection (SSC) autism data. A fill description of methods are given in the following paper which can be used to reference CNVision:
http://www.ncbi.nlm.nih.gov/pubmed/21658581

CNVision Web Site

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User Reviews

  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Documentation is outdated -> Specifically link to formatting of finalreport, and etc is broken.

    Posted 10/12/2015
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Reliable and runs smoothly

    Posted 11/12/2012
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Additional Project Details

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

Perl

Registered

2012-09-30

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