Search Results for "citation" - Page 3
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Showing 118 open source projects for "citation"
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TermEvaluator
A tool for evaluating automatic terminology extraction.
*For citation please kindly reference the following work: -Inkpen D., Paribakht, T. S., Faez F., and Amjadian, E. 2016. International Journal of Computational Linguistics and Applications. This is a tool to evaluate terminology extraction performed on corpora. Human judges can choose if an extracted term is correct, or incorrect. Already known terms (say from a dictionary) can be imported to the tool and marked automatically as correct by the tool so that the annotators won't have... -
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Hooked Power Law R
R code to fit a hooked power law distribution to citation data
R code to fit a hooked power law distribution to citation data -
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COPEread
Connecting Overlapped Pair-End Reads
COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research. The full citation: COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao Zhang... -
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Chicago Manual of Style
Creates author-date ref list entries and citations
This tool lets you enter and save data about books (author, title, etc.). The tool then creates a reference list entry and a citation for that book, according to the author-date system of the Chicago Manual of Style. You then display these reference list entries and citations in a web page. For a citation, you type the page number in the web page. You can then copy the reference list entry or citation to you clipboard, and pasted it into a Pages document. To use this tool: 1) Update... -
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The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org
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confluence-citation
User macro for citation in Confluence
This project contains two Confluence User Macros which can be used to implement a citation functionality in Confluence (works with Confluence 5.5.6 or above). Please not that we have an open-source plugin now which offers more functionality. See: https://marketplace.atlassian.com/plugins/de.edrup.confluence.plugins.simple-cite -
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Aspergillus databases for FHiTINGS
This project contains Aspergillus databases for FHiTINGS
This project contains fasta files of ITS, BenA, and CaM sequences for Aspergillus species, which can be used with FHiTINGS program (https://sourceforge.net/projects/fhitings/). Citation Lee, S., Yamamoto, N.* (2015). Accuracy of the high-throughput amplicon sequencing to identify species within the genus Aspergillus, Fungal Biology, in press. -
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Aspergillus databases for FHiTINGS
This project contains alternative databases for FHiTINGS
This project contains fasta files of ITS, BenA, and CaM sequences for Aspergillus species, which can be used with FHiTINGS program (https://sourceforge.net/projects/fhitings/). Citation Lee, S., Yamamoto, N. (2015). Accuracy of the high-throughput amplicon sequencing to identify species within the genus Aspergillus, Fungal Biology, in press. -
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This project contains research from the papers - [1] Finding Relevant Indian Judgments using dispersion of Citation Network Minocha, Akshay, Navjyoti Singh and Arjit Srivastava "SIMPLEX 2015 The 7th Annual Workshop on Simplifying Complex Networks for Practitioners In conjunction with the 24th International World Wide Web Conference (WWW) May 19, 2015, Florence, Italy." [2] Case Outcome Prediction using Legal Citation Network and Litigant Identification Features Minocha...
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repDNA
repDNA is a Python package to generate various features of DNA sequenc
Important links =============== - Home-page: http://bioinformatics.hitsz.edu.cn/repDNA/ - Official source code repo: https://github.com/liufule12/repDNA - Download releases: http://bioinformatics.hitsz.edu.cn/repDNA/download - Supplymentary (maunal and example): http://bioinformatics.hitsz.edu.cn/repDNA/supplementary - Issue tracker: https://github.com/liufule12/repDNA/issues - Citation: http://bioinformatics.hitsz.edu.cn/repDNA/citation Python Requirements... -
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SOAP3-DP
Fast, Accurate and Sensitive GPU-based Short Read Aligner
... with different lengths. SOAP3-dp natively supports BAM file format and provides the same scoring scheme as BWA, which enables it to be integrated into existing analysis pipelines. Citation: Luo R, Wong T, Zhu J, Liu C-M, Zhu X, et al. (2013) SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner. PLoS ONE 8(5): e65632. doi:10.1371/journal.pone.0065632 -
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ionbibtex
A BibTeX exporter for ION Journals and Conferences
The Institute of Navigation* (ION) is a technical society specialising in navigation-related topics. The produce an academic journal and several conferences for both academia and industry. Unfortunantly, they offer no "export citation" functionalty for those that manage their papers using BibTeX (or other citation manager). This project is a simple screen scraper to extract the nessessary citation information and format it as a BibTeX citation. --- * N.B. This project is not endorsed... -
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IPAT
A freely accessible software for analyzing multiple patent documents
Designed IPAT (Intelligent Patent Analysis Tool): A freely accessible software for analyzing multiple patent documents with inbuilt landscape visualization (Microsoft Visual Studio 2010: C# Code) consist of IPAT Compiler Search engine tool which extract specific results in a predetermined order into an excel sheet IPAT Visualizer Analyzes inventor, assignee, citation, trend and technology; based on user define selection -
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Translates first order formulas into logic programs under the stable model semantics based on [citation needed]. This is a work in progress and is not functional as of 6/9/2014
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Free and open source grammar checker. Currently capable of identifying errors: 1) Incomplete sentence (fragment) 2) Subject Verb Plurality Agreement Incomplete Sentence Example: "John a very man." Subject Verb Plurality Agreement Example: "They walks into a classroom." This software utilizes parts-of-speech tagging software that was developed and published by the Natural Language Processing Group at Stanford University. Many thanks!!! (Full citation in README)
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... http://rdp.cme.msu.edu/tutorials/framebot/RDPtutorial_FRAMEBOT.html. Updates: FrameBot now uses a kmer pre-filtering heuristic for no-metric-search. This pre-filtering may increase the speed by one to two orders of magnitude. CITATION: Wang, Q., Quensen, J. F., Fish, J. A., Lee, T. K., Sun, Y., Tiedje, J. M., and Cole, J. R. 2013. Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool. mBio 4:e00592-13.
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BibDeskWord-OSCOLA
Reference Management on the Mac
Implements a OSCOLA compatible citation management for BibDesk and Microsoft Word on the Mac using AppleScript. See the Wiki for more details. -
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RootAnnotator
Computes root posterior probabilities given a sample of rooted trees.
... be noted that RootAnnotator generate MCC trees by running TreeAnnotator (distributed with BEAST; https://code.google.com/p/beast-mcmc/). Citation: Calvignac-Spencer S, Schulze JM, Zickmann F, Renard BY. Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage. PLOS Currents Outbreaks. 2014 Jun 16. Edition 1. doi: 10.1371/currents.outbreaks.c0e035c86d721668a6ad7353f7f6fe86. -
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CDPOPgui
GUI Frontend for CDPOP
... movement, breeding and dispersal on a continuous cost surface. Acknowledgements Allen Warren developed the GUI.The citation for this program is: Landguth EL, Cushman SA (2010) CDPOP: A spatially-explicit cost distance population genetics program. Mol. Ecol. Res. 10, 156-161. Updates to the software, including natural selection, can be referenced with Landguth EL, Cushman SA, Johnson NA (2012) Simulating natural selection in landscape genetics. Molecular Ecology Resources, 12, 363-368. -
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
... interaction analysis for binary traits. Here we present a novel software package GENIE, which utilizes the power of multiple GPU or CPU processor cores to parallelize the interaction analysis. Citation: Chikkagoudar, S., Wang, K., & Li, M. (2011). GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores. BMC research notes, 4(1), 158. -
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IHC Profiler
A plugin for the quantitative analysis of Immunohistochemistry samples
...-x- Full Publication and Citation: Varghese F, Bukhari AB, Malhotra R, De A (2014) IHC Profiler: An Open Source Plugin for the Quantitative Evaluation and Automated Scoring of Immunohistochemistry Images of Human Tissue Samples. PLoS ONE 9(5): e96801. doi:10.1371/journal.pone.0096801 Link: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0096801 -x-x-x-x-x-x-x- Your feedback would be highly appreciated. Please rate so we can work on improving it further. Thank you! -
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Systems Glycobiology
Glycosylation Network Analysis Toolbox (GNAT)
GNAT is an open source, platform-independent MATLAB based toolbox. It is written in MATLAB and Java. It has been tested in Windows (Windows 7), Linux (Ubuntu), and Mac OS (X Lion) platforms. The original GNAT package (file GNAT.zip) provides functions for reading, writing, manipulation, visualization and simulation of glycan structures and glycosylation reaction networks (citation [1]). The second version of this software (GNATv2beta.zip) upgrades the original GNAT program with additional... -
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JUMMP
JUMMP: Job Uninterrupted Maneuverable MapReduce Platform
... of this project for research requires citation of our paper. W.C. Moody; L. Ngo; E. Duffy; A. Apon; "JUMMP: Job Uninterrupted Maneuverable MapReduce Platform", Cluster Computing (CLUSTER), 2013 IEEE International Conference on , 23-27 Sept. 2013 -
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We developed a universal approach and tool designated Geptop, based on orthology and phylogeny, to offer gene essentiality annotations. The web server and standalone version of Geptop are available at http://cefg.uestc.edu.cn/geptop/ free of charge. This package is dependent on Python, Biopython and BLAST+. Citation: Wei W, Ning L-W, Ye Y-N, Guo F-B (2013) Geptop: A Gene Essentiality Prediction Tool for Sequenced Bacterial Genomes Based on Orthology and Phylogeny. PLoS ONE 8(8): e72343. doi...
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ReDBox is a metadata registry application for describing research data. The open source solution is developed and supported by the Queensland Cyber Infrastructure Foundation (QCIF). As part of the ANDS-funded Metadata Stores Project, the University of South Australia has developed a number of customisations to enhance this system.