RootAnnotator Icon

RootAnnotator

Computes root posterior probabilities given a sample of rooted trees.

Add a Review
0 Downloads (This Week)
Last Update:
Download RootAnnotator.zip
Browse All Files

Screenshots

Description

RootAnnotator computes root posterior probabilities. For this, it makes use of posterior collections of trees generated under clock models (e.g. .nexus files such as those generated by BEAST or MrBayes), from which branches wearing the root are identified and counted. It can annotate root posteriors on different types of summary trees, including maximum clade credibility trees (MCC trees). It can also create a file for Tracer to visualize the convergence of root posteriors.

It should be noted that RootAnnotator generate MCC trees by running TreeAnnotator (distributed with BEAST; https://code.google.com/p/beast-mcmc/).

Citation: Calvignac-Spencer S, Schulze JM, Zickmann F, Renard BY. Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage. PLOS Currents Outbreaks. 2014 Jun 16. Edition 1. doi: 10.1371/currents.outbreaks.c0e035c86d721668a6ad7353f7f6fe86.

RootAnnotator Web Site

Categories

KEEP ME UPDATED

Other Useful Business Software

The Leading Provider of Business VoIP Phone Systems Icon

Award-Winning Business VoIP Phone System

The Leading Provider of Business VoIP Phone Systems Icon
1 of 5 2 of 5 3 of 5 4 of 5 5 of 5
62 Reviews
  • Unlimited Calling, Faxing, Video Conferencing
  • 24/7 U.S. Based Customer Support
  • Super Reliable, Simple to Use
Write a Review

User Reviews

Be the first to post a review of RootAnnotator!

Additional Project Details

Registered

2013-05-31

Thanks for helping keep SourceForge clean.

Screenshot instructions:
Windows
Mac
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies
X

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

No, thanks