Search Results for "citation"
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Showing 141 open source projects for "citation"
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Go From AI Idea to AI App FastAccess Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.
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Better BibTeX for Zotero
Make Zotero effective for us LaTeX holdouts
Better BibTeX (BBT) is a plugin for Zotero and Juris-M that makes it easier to manage bibliographic data, especially for people authoring documents using text-based toolchains (e.g. based on LaTeX / Markdown). Zotero does all its work in UTF-8 Unicode, which is absolutely the right thing to do. Unfortunately, for those shackled to BibTeX and who cannot (yet) move to BibLaTeX, unicode is a major PITA. Also, Zotero supports some simple HTML markup in your items that Bib(La)TeX won’t... -
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adstex
Automated generation of NASA ADS bibtex entries directly from citation
adstex automatically identifies all citation keys (e.g., identifiers, author+year) in your TeX source files and uses NASA's Astrophysics Data System (ADS) to generate corresponding bibtex entries. Write your papers without worrying about the bibtex entries. Simply put down arXiv IDs, ADS bibcodes, DOIs, or first author & year citation keys in your \cite commands, and then use adstex to automatically generate the bibtex file for you. -
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PaSa
An advanced paper search agent powered by large language models
...Instead of simply translating a query into keywords and returning a flat list of matching papers, PaSa uses a dual-agent architecture (Crawler + Selector) that can iteratively search, read, analyze, and filter academic publications — simulating how a researcher might dig through citation networks, expand references, and evaluate relevance based on both metadata and content. Given a complex scholarly question (for example, “Which works focus on non-stationary reinforcement learning with UCB-based value methods?”), PaSa decomposes the task: the Crawler generates search queries, retrieves candidate papers (via search tools and citation expansion), then adds them to a “paper queue.” ... -
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GPT Academic
Research-oriented chatbot framework
GPT Academic is a research-oriented chatbot framework designed to integrate large language models (LLMs) into academic workflows. It provides tools for structured document processing, citation management, and enhanced interaction with research papers. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Auto-Deep-Research
Your Fully-Automated Personal AI Assistant
...Users provide a research topic or multifaceted goal, and the system autonomously breaks the objective down into subtasks like literature collection, critical summarization, cross-comparison, citation extraction, metric evaluation, and structured writing. Auto-Deep-Research integrates retrieval from academic and web sources, processes document corpora for relevance and key insights, and organizes outputs into coherent chapters or sections according to research standards. It also embeds validation loops, where intermediate drafts are self-checked for consistency, coverage, and alignment with sound reasoning practices, reducing reliance on raw generation alone. -
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GROBID
A machine learning software for extracting information
...References extraction and parsing from articles in PDF format, around .87 F1-score against on an independent PubMed Central set of 1943 PDF containing 90,125 references, and around .89 on a similar bioRxiv set of 2000 PDF (using the Deep Learning citation model). All the usual publication metadata are covered (including DOI, PMID, etc.). -
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PaperQA2
High accuracy RAG for answering questions from scientific documents
...See our recent 2024 paper to see examples of PaperQA2's superhuman performance in scientific tasks like question answering, summarization, and contradiction detection. In this example we take a folder of research paper PDFs, magically get their metadata - including citation counts and a retraction check, then parse and cache PDFs into a full-text search index, and finally answer the user question with an LLM agent. -
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Zotero
Tool to help you collect, organize, annotate, cite, and share research
Zotero is a powerful, free, open-source research management application designed to help students, academics, and professionals collect, organize, annotate, cite, and share research sources and materials for papers, projects, or books. It can save web pages, PDFs, books, articles, and more with metadata, automatically extract bibliographic information, and organize items into collections and tag systems, while supporting notes and annotations directly alongside references. Zotero’s interface... -
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Feynman
The open source AI research agent
Feynman is a command-line AI research agent designed to automate complex research workflows by orchestrating multiple specialized agents that collaborate to gather, analyze, and synthesize information into structured outputs. It operates as a “Claude Code for research,” allowing users to input natural language queries and receive fully developed, source-grounded research briefs, literature reviews, or experimental analyses. The system is built around a multi-agent architecture that includes... -
AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
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JabRef Bibliography Management
Graphical Java application for managing BibTeX and biblatex
JabRef is an open-source, cross-platform citation and reference management tool. Stay on top of your literature: JabRef helps you to collect and organize sources, find the paper you need and discover the latest research. JabRef is available free of charge and is actively developed. It supports you in every step of your research work. -
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PaperAI
Semantic search and workflows for medical/scientific papers
PaperAI is an open-source framework for searching and analyzing scientific papers, particularly useful for researchers looking to extract insights from large-scale document collections. -
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AutoResearchClaw
Autonomous research from idea to paper. Chat an Idea. Get a Paper 🦞
AutoResearchClaw is an open-source framework designed to automatically generate full academic research papers from a single idea or topic. Built in Python, it orchestrates a multi-stage research pipeline that gathers literature, formulates hypotheses, runs experiments, analyzes results, and writes the final paper. The system retrieves real academic references from sources such as arXiv and Semantic Scholar to ensure credible citations. It can automatically generate code for experiments, run... -
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SurfSense
Connect any LLM to your internal knowledge sources
...Team collaboration is a core focus, with real-time shared chats, role-based access control, and comment threads enabling organized workflows. The platform also supports advanced retrieval augmented generation (RAG) capabilities, enabling powerful search and citation features that help answer questions with contextually relevant data. -
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Eko
Build Production-ready Agentic Workflow with Natural Language
Eko (Eko Keeps Operating) is a JavaScript framework designed for building production-ready agent-based workflows using natural language commands. It allows developers to create automated agents that can handle complex workflows in both computer and browser environments. With a focus on high development efficiency, Eko simplifies the creation of multi-step workflows, enabling users to integrate and automate tasks across platforms. It provides a unified interface for managing agents, offering... -
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Langroid
Harness LLMs with Multi-Agent Programming
Given the remarkable abilities of recent Large Language Models (LLMs), there is an unprecedented opportunity to build intelligent applications powered by this transformative technology. The top question for any enterprise is: how best to harness the power of LLMs for complex applications? For technical and practical reasons, building LLM-powered applications is not as simple as throwing a task at an LLM system and expecting it to do it. Effectively leveraging LLMs at scale requires a... -
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Primitive UI
A front-end design toolkit for developing web apps
...Headings all have the same line height and margins, and only the font size is individually defined. The blockquote is set to have a left border, with the browser default padding removed. A citation will be right-aligned and italicized. -
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hithesis
LaTeX thesis template package for Harbin Institute of Technology
...It provides class files and examples that handle title pages, abstracts in multiple languages, acknowledgments, lists of figures/tables, symbols, and properly styled chaptering. The template includes bibliography settings and citation styles that conform to school rules, along with ready-made environments for formulas, algorithms, and code. It supports Chinese and English typesetting, sensible defaults for fonts, and modern engines like XeLaTeX for robust CJK support. Cross-references, numbering, and page layout are automated, reducing the risk of last-minute formatting errors before submission. ... -
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Pro-statTarget is Portable Version and standalone software, provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics. Author: Hemi Luan Maintainer: Hemi Luan Citation (from within R, enter citation("statTarget")): Luan H, Ji F, Chen Y, Cai Z (2018). “statTarget: a streamlined tool for signal drift correction and interpretations of quantitative mass spectrometry-based omics data.” Analytica Chimica Acta, 1036, 66-72.
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Rapid Reference
An extension that allows for hassle-free website citation/referencing.
...Start a session in the panel of the extension 2. Do required research/website navigation 3. You can check the preview of the cited references in the panel 4. You can copy the citation list to the clipboard through simply clicking the "Copy Citation" button 5. You're Done! Thanks for using my software 😊 -
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LocalBiz Schema Generator
Generate schema.org JSON-LD and formatted citations for local business
A lightweight Python utility for generating structured data (JSON-LD schema.org markup) and formatted citations for local businesses. Helps developers implement LocalBusiness schema for SEO and citation consistency. Features: - Generate schema.org LocalBusiness JSON-LD - Format NAP (Name, Address, Phone) data consistently - Output examples for various business types -
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CiteFlow
Desktop research workspace for PDFs, notes, citations, bibliographies.
...Import PDFs, read them inside the app, search within documents, compare files side by side, highlight key passages, and add page-based notes. CiteFlow can assist with DOI metadata detection, keeps citation history linked to copied text, and generates citations and bibliographies in APA 7 and MLA 9. OCR support helps make scanned PDFs searchable, while project-wide search helps you find matching text across PDFs, highlights, and notes. Supported interface languages include English, Turkish, Chinese, Spanish, German, French, Russian, and Japanese. -
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Biber is a sophisticated bibliography processing backend for the LaTeX biblatex package. It supports a unsurpassed feature set for automated conformance to complex bibliography style requirements such as labelling, sorting and name handling. It has comprehensive Unicode support.
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...IBEIP uses a hierarchical iterative merging model to merge highly overlapping epitopes and identify the hot nAb binding region as the B cell dominant epitope region. IBEIP is also applicable to analyzing high-mutant antigens and complex epitope structures that span adjacent monomers. Citation: Yun-Fei Ma, Ye Liu. Intelligent Batch Epitope Identification and Partitioning: an intelligent tool for the identification of B cell dominant epitopes. Brief. Bioinform. 2025, 26(4):bbaf310.
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Hydrogen Bond Analysis Tool (HBAT)
HBAT 2 is migrated from PERL to Python.
...Latest Documentation: https://hbat.abhishek-tiwari.com/ Web Server Version: http://hbat-web.abhishek-tiwari.com Latest Github Release: http://github.com/abhishektiwari/hbat Citation: Tiwari, A., & Panigrahi, S. K. (2007). HBAT: A Complete Package for Analysing Strong and Weak Hydrogen Bonds in Macromolecular Crystal Structures. In Silico Biology, 7(6). https://doi.org/10.3233/ISI-2007-00337 -
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Airborne Data Processing and Analysis
Software to processing and analyze of airborne measurements.
The Airborne Data Processing and Analysis (ADPAA) package is an open-source software package containing a collection of programs and scripts to process and analyze data from in-situ instruments deployed on airborne platforms. The ADPAA package was started to process data on the North Dakota Citation Research Aircraft but has been used to process data on many airborne platforms. The software methodology used in ADPAA is provided in the peer-review publication: Delene, D. J., Airborne Data Processing and Analysis Software Package, Earth Science Informatics, 4(1), 29-44, 2011, URL: http://dx.doi.org/10.1007/s12145-010-0061-4, DOI: 10.1007/s12145-010-0061-4.
