Search Results for "citation"
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Showing 119 open source projects for "citation"
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PaperQA2
High accuracy RAG for answering questions from scientific documents
PaperQA2 is a package for doing high-accuracy retrieval augmented generation (RAG) on PDFs or text files, with a focus on the scientific literature. See our recent 2024 paper to see examples of PaperQA2's superhuman performance in scientific tasks like question answering, summarization, and contradiction detection. In this example we take a folder of research paper PDFs, magically get their metadata - including citation counts and a retraction check, then parse and cache PDFs into a full-text... -
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Better BibTeX for Zotero
Make Zotero effective for us LaTeX holdouts
Better BibTeX (BBT) is a plugin for Zotero and Juris-M that makes it easier to manage bibliographic data, especially for people authoring documents using text-based toolchains (e.g. based on LaTeX / Markdown). Zotero does all its work in UTF-8 Unicode, which is absolutely the right thing to do. Unfortunately, for those shackled to BibTeX and who cannot (yet) move to BibLaTeX, unicode is a major PITA. Also, Zotero supports some simple HTML markup in your items that Bib(La)TeX won’t... -
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adstex
Automated generation of NASA ADS bibtex entries directly from citation
adstex automatically identifies all citation keys (e.g., identifiers, author+year) in your TeX source files and uses NASA's Astrophysics Data System (ADS) to generate corresponding bibtex entries. Write your papers without worrying about the bibtex entries. Simply put down arXiv IDs, ADS bibcodes, DOIs, or first author & year citation keys in your \cite commands, and then use adstex to automatically generate the bibtex file for you. -
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Langroid
Harness LLMs with Multi-Agent Programming
Given the remarkable abilities of recent Large Language Models (LLMs), there is an unprecedented opportunity to build intelligent applications powered by this transformative technology. The top question for any enterprise is: how best to harness the power of LLMs for complex applications? For technical and practical reasons, building LLM-powered applications is not as simple as throwing a task at an LLM system and expecting it to do it. Effectively leveraging LLMs at scale requires a... -
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GROBID
A machine learning software for extracting information
... here covers the usual bibliographical information (e.g. title, abstract, authors, affiliations, keywords, etc.). References extraction and parsing from articles in PDF format, around .87 F1-score against on an independent PubMed Central set of 1943 PDF containing 90,125 references, and around .89 on a similar bioRxiv set of 2000 PDF (using the Deep Learning citation model). All the usual publication metadata are covered (including DOI, PMID, etc.). -
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JabRef Bibliography Management
Graphical Java application for managing BibTeX and biblatex
JabRef is an open-source, cross-platform citation and reference management tool. Stay on top of your literature: JabRef helps you to collect and organize sources, find the paper you need and discover the latest research. JabRef is available free of charge and is actively developed. It supports you in every step of your research work. -
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CiteSpace
A widely used tool for visual exploration of scientific literature.
Visit the new site: https://citespace.podia.com CiteSpace generates interactive visualizations of structural and temporal patterns and trends of a scientific field. It facilitates a systematic review of a knowledge domain through an in-depth visual analytic process. It can process citation data from popular sources such as the Web of Science, Scopus, Dimensions, and the Lens. CiteSpace also supports basic visual analytic functions for datasets without citation-related information... -
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BlogHelper
Helps user write blog content and entries
A tray assistant that helps domestic users to write, publish local articles to mainstream blog platforms (Zhihu, Jianshu, Blog Park, CSDN, SegmentFault, Nuggets, Open Source China) with one click, upload clipboard pictures to Tubed (Sina, Github, Picture Shell, Tencent Cloud, Alibaba Cloud, Youpai Cloud, Qiniu Cloud). A little assistant that does not have any interface and is only stored in the system tray, to help more people write better! One-click publishing of local articles to Zhihu,... -
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citation and reference checker
A tool to track down missing references in an essay or research paper.
This software is intended for proofreaders, academics and postgrad students. Many researchers these days use some excellent tools to manage the bibliography, however, adoption of these tools is not universal. Furthermore, from the point of view of a proofreader, whether or not bibliographic software was used in creating a publication, it is necessary to check the integrity of citations and references. On occasion, the citations in the text and references at the end of the paper might get... -
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Biber is a sophisticated bibliography processing backend for the LaTeX biblatex package. It supports a unsurpassed feature set for automated conformance to complex bibliography style requirements such as labelling, sorting and name handling. It has comprehensive Unicode support.
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The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments for bacterial and archaeal 16S rRNA sequences, fungal LSU and fungal ITS sequences, with confidence estimates for each assignment. More information and tutorials on how to install, use and retrain RDP Clasifier can be found on at https://github.com/rdpstaff/classifier and John Quensen's blog (https://john-quensen.com/). Citation: 1. Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive...
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Premonition
Add block-styled content to your site. Like summaries, notes and hints
Premonition is a Jekyll plugin that can transform Markdown blockquotes into styled blocks of code. The default template and stylesheet focus on creating info boxes, but through the templating system, you can modify it to suit your needs. With version 4 we also introduced a new citation box. -
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WIKINDX
Virtual Research Environment / On-line Bibliography Manager
... a citation style editor and import/export of bibliographies (BibTeX, Endnote, RIS etc.). WIKINDX supports multiple attachments with each reference, multiple language localizations, and uses a template system to allow users to visually integrate WIKINDX into their sites. WIKINDX runs on a web server giving you and your research group ownership and global access from any web-enabled device. You manage your database, you own your data. WIKINDX can be test-driven at: https://testdrive.wikindx.com -
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... websites: https://tangsoftwarelab.shinyapps.io/synergyfinder/ Bioconductor R package: https://www.bioconductor.org/packages/release/bioc/html/synergyfinder.html Citation: Zheng, S.; Wang, W.; Aldahdooh, J.; Malyutina, A.; Shadbahr, T.; Tanoli Z; Pessia, A.; Tang, J. SynergyFinder Plus: Toward Better Interpretation and Annotation of Drug Combination Screening Datasets. Genomics, Proteomics & Bioinformatics 2022, 20, 587-596 https://doi.org/10.1016/j.gpb.2022.01.004
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Airborne Data Processing and Analysis
Software to processing and analyze of airborne measurements.
The Airborne Data Processing and Analysis (ADPAA) package is an open-source software package containing a collection of programs and scripts to process and analyze data from in-situ instruments deployed on airborne platforms. The ADPAA package was started to process data on the North Dakota Citation Research Aircraft but has been used to process data on many airborne platforms. The software methodology used in ADPAA is provided in the peer-review publication: Delene, D. J., Airborne Data... -
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This is not really a "final" dataset. While the analysis has to come as a secondary priority to other responsibilities, this data set can serve at least 2 purposes: 1) Provide an experimental public lab notebook / log for an on-going experiment 2) After a few processed data sets have been added, provide an intermediate citation In the meantime, the best citation to use is probably the GitHub acknowledgements: https://github.com/cwarden45/RNAseq_templates/blob/master...
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Desktop Plagiarism Checker
Free plagiarism software for .NET (Windows 7, 8.1, 10, 11)
... of a longer text. The AI detector is an advanced feature that uses artificial intelligence to identify potential instances of plagiarism and provides suggestions for rewording. Additionally, the APA citation generator is a helpful tool for creating accurate and properly formatted citations in the American Psychological Association style, saving writers time and effort in citing their sources correctly. With these tools, writers can ensure the originality and integrity of their work. -
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Rapid Reference
An extension that allows for hassle-free website citation/referencing.
... 2. Do required research/website navigation 3. You can check the preview of the cited references in the panel 4. You can copy the citation list to the clipboard through simply clicking the "Copy Citation" button 5. You're Done! Thanks for using my software 😊 -
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Academic Tech Toolbox
A collection of productivity tools for academic researchers.
A collection of productivity tools for academic researchers: RefTraceback: Found an article/thesis of interest? Want to know more by reading some of the sources referenced by the publication? This tool gives you the convenience of selecting a bunch of references at a time and looking them up in one go. Citation and reference checker: A tool for academics, students and, most of all, proofreaders. Helps identify wrong or missing references/citations in an academic text. Check it out... -
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JDFTx
Joint Density Functional Theory
JDFTx is a plane-wave density functional theory code designed for electronic structure theory development. One prominent unique capability is the treatment of solvated electronic systems using joint density functional theory. Please see http://jdftx.org for download and compile instructions, tutorials, documentation and citation information. -
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GiNaCDE
A software for solving Nonlinear Differential Equations
... be compiled for other operating systems (e.g. UBUNTU, MacOS) using the source code available here: https://github.com/mithun218/GiNaCDE To know more about the GiNaCDE, we refer to this documentation file: https://github.com/mithun218/GiNaCDE/blob/master/doc/documentation.pdf Citation: If you use this software in your project, please cite the following article: https://doi.org/10.21105/joss.03885 -
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nligaStruct
Isogeometric structural analysis with Bézier extraction
... materials, including St. Venant-Kirchhoff, incompressible neo-Hookean and compressible neo-Hookean, are employed in the large deformation of Kirchhoff-Love shells. A series of popular benchmark examples and their geometrical models are demonstrated in the package. Citation: Xiaoxiao Du, Gang Zhao, Ran Zhang, Wei Wang, Jiaming Yang. Numerical implementation for isogeometric analysis of thin-walled structures based on a Bézier extraction framework: nligaStruct. Thin-Walled Structures. 2022. -
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refbase - Web Reference Database
Online bibliographic manager for research groups. Zotero-compatible.
refbase is a web-based bibliographic manager which can import and export references in various formats (including BibTeX, Endnote, MODS XML, and OpenOffice). It can make formatted lists of citations and offers powerful searching, rich metadata, and RSS. -
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DeepImageTranslator
DeepImageTranslator: a deep-learning utility for image translation
Created by: Run Zhou Ye, En Zhou Ye, and En Hui Ye DeepImageTranslator: a free, user-friendly tool for image translation using deep-learning and its applications in CT image analysis Citation: Please cite this software as: Ye RZ, Noll C, Richard G, Lepage M, Turcotte ÉE, Carpentier AC. DeepImageTranslator: a free, user-friendly graphical interface for image translation using deep-learning and its applications in 3D CT image analysis. SLAS technology. 2022 Feb 1;27(1):76-84. https...