Search Results for "citation"
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Showing 148 open source projects for "citation"
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Better BibTeX for Zotero
Make Zotero effective for us LaTeX holdouts
Better BibTeX (BBT) is a plugin for Zotero and Juris-M that makes it easier to manage bibliographic data, especially for people authoring documents using text-based toolchains (e.g. based on LaTeX / Markdown). Zotero does all its work in UTF-8 Unicode, which is absolutely the right thing to do. Unfortunately, for those shackled to BibTeX and who cannot (yet) move to BibLaTeX, unicode is a major PITA. Also, Zotero supports some simple HTML markup in your items that Bib(La)TeX won’t... -
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adstex
Automated generation of NASA ADS bibtex entries directly from citation
adstex automatically identifies all citation keys (e.g., identifiers, author+year) in your TeX source files and uses NASA's Astrophysics Data System (ADS) to generate corresponding bibtex entries. Write your papers without worrying about the bibtex entries. Simply put down arXiv IDs, ADS bibcodes, DOIs, or first author & year citation keys in your \cite commands, and then use adstex to automatically generate the bibtex file for you. -
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GPT Academic
Research-oriented chatbot framework
GPT Academic is a research-oriented chatbot framework designed to integrate large language models (LLMs) into academic workflows. It provides tools for structured document processing, citation management, and enhanced interaction with research papers. -
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PaperSpine
Motivation-driven skill for learning from strong academic papers
...It emphasizes the central motivation of a paper, helping writers connect claims, structure, evidence, citations, and revisions into a coherent argument. The suite includes specialized skills for research, citation, rewriting, LaTeX, auditing, translation, humanization, and updates. It is best suited for users who need format-aware, evidence-aware academic writing support rather than generic text generation. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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PaSa
An advanced paper search agent powered by large language models
...Instead of simply translating a query into keywords and returning a flat list of matching papers, PaSa uses a dual-agent architecture (Crawler + Selector) that can iteratively search, read, analyze, and filter academic publications — simulating how a researcher might dig through citation networks, expand references, and evaluate relevance based on both metadata and content. Given a complex scholarly question (for example, “Which works focus on non-stationary reinforcement learning with UCB-based value methods?”), PaSa decomposes the task: the Crawler generates search queries, retrieves candidate papers (via search tools and citation expansion), then adds them to a “paper queue.” ... -
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Auto-Deep-Research
Your Fully-Automated Personal AI Assistant
...Users provide a research topic or multifaceted goal, and the system autonomously breaks the objective down into subtasks like literature collection, critical summarization, cross-comparison, citation extraction, metric evaluation, and structured writing. Auto-Deep-Research integrates retrieval from academic and web sources, processes document corpora for relevance and key insights, and organizes outputs into coherent chapters or sections according to research standards. It also embeds validation loops, where intermediate drafts are self-checked for consistency, coverage, and alignment with sound reasoning practices, reducing reliance on raw generation alone. -
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Vane
Vane is an AI-powered answering engine
...The platform supports both local LLMs through Ollama and cloud providers such as OpenAI, Claude, Gemini, and Groq, giving users flexibility in how queries are processed. It integrates web search through SearxNG while also supporting discussions, academic sources, image search, and video search to generate citation-backed responses. Vane includes multiple search modes optimized for speed, balanced usage, or deep research depending on the complexity of the query. Its architecture emphasizes modular orchestration, custom provider systems, streaming responses, and widget-based UI enhancements for calculations, weather, and contextual data. Designed as a local-first alternative to commercial AI search engines, the project prioritizes privacy, extensibility, and transparent source-backed answers. -
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GROBID
A machine learning software for extracting information
...References extraction and parsing from articles in PDF format, around .87 F1-score against on an independent PubMed Central set of 1943 PDF containing 90,125 references, and around .89 on a similar bioRxiv set of 2000 PDF (using the Deep Learning citation model). All the usual publication metadata are covered (including DOI, PMID, etc.). -
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PaperQA2
High accuracy RAG for answering questions from scientific documents
...See our recent 2024 paper to see examples of PaperQA2's superhuman performance in scientific tasks like question answering, summarization, and contradiction detection. In this example we take a folder of research paper PDFs, magically get their metadata - including citation counts and a retraction check, then parse and cache PDFs into a full-text search index, and finally answer the user question with an LLM agent. -
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Zotero
Tool to help you collect, organize, annotate, cite, and share research
Zotero is a powerful, free, open-source research management application designed to help students, academics, and professionals collect, organize, annotate, cite, and share research sources and materials for papers, projects, or books. It can save web pages, PDFs, books, articles, and more with metadata, automatically extract bibliographic information, and organize items into collections and tag systems, while supporting notes and annotations directly alongside references. Zotero’s interface... -
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PaperAI
Semantic search and workflows for medical/scientific papers
PaperAI is an open-source framework for searching and analyzing scientific papers, particularly useful for researchers looking to extract insights from large-scale document collections. -
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JabRef Bibliography Management
Graphical Java application for managing BibTeX and biblatex
JabRef is an open-source, cross-platform citation and reference management tool. Stay on top of your literature: JabRef helps you to collect and organize sources, find the paper you need and discover the latest research. JabRef is available free of charge and is actively developed. It supports you in every step of your research work. -
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Feynman
The open source AI research agent
Feynman is a command-line AI research agent designed to automate complex research workflows by orchestrating multiple specialized agents that collaborate to gather, analyze, and synthesize information into structured outputs. It operates as a “Claude Code for research,” allowing users to input natural language queries and receive fully developed, source-grounded research briefs, literature reviews, or experimental analyses. The system is built around a multi-agent architecture that includes... -
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SurfSense
Connect any LLM to your internal knowledge sources
...Team collaboration is a core focus, with real-time shared chats, role-based access control, and comment threads enabling organized workflows. The platform also supports advanced retrieval augmented generation (RAG) capabilities, enabling powerful search and citation features that help answer questions with contextually relevant data. -
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AutoResearchClaw
Autonomous research from idea to paper. Chat an Idea. Get a Paper 🦞
AutoResearchClaw is an open-source framework designed to automatically generate full academic research papers from a single idea or topic. Built in Python, it orchestrates a multi-stage research pipeline that gathers literature, formulates hypotheses, runs experiments, analyzes results, and writes the final paper. The system retrieves real academic references from sources such as arXiv and Semantic Scholar to ensure credible citations. It can automatically generate code for experiments, run... -
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cs-paper-checklist
A final sanity checklist to help your CS paper get accepted
...It emphasizes reproducibility, meaningful baselines, ablation studies, statistical reporting, and clear definitions. Dedicated writing checks address sentence length, paragraph size, passive voice, vague language, and undefined abbreviations. Citation safeguards encourage manual verification of every reference, especially material suggested by language models. Final checks cover anonymity, page limits, compilation errors, file naming, coauthor review, and cross-device rendering. -
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Local Deep Research
95% on SimpleQA (e.g. Qwen3.6-27B on a 3090)
...It runs locally, giving users full control over their data, privacy, and infrastructure while supporting both local and cloud-based LLMs. The system breaks down complex queries into smaller steps, performs parallel searches across web and academic sources, and generates structured, citation-backed reports. It also supports personal document ingestion through vector search, enabling users to build a private, searchable knowledge base. The platform includes a web interface, Docker-based deployment, and flexible configuration options, making it accessible to both developers and researchers. Its architecture emphasizes transparency, customization, and reproducibility in AI-assisted research workflows. -
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Langroid
Harness LLMs with Multi-Agent Programming
Given the remarkable abilities of recent Large Language Models (LLMs), there is an unprecedented opportunity to build intelligent applications powered by this transformative technology. The top question for any enterprise is: how best to harness the power of LLMs for complex applications? For technical and practical reasons, building LLM-powered applications is not as simple as throwing a task at an LLM system and expecting it to do it. Effectively leveraging LLMs at scale requires a... -
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Eko
Build Production-ready Agentic Workflow with Natural Language
Eko (Eko Keeps Operating) is a JavaScript framework designed for building production-ready agent-based workflows using natural language commands. It allows developers to create automated agents that can handle complex workflows in both computer and browser environments. With a focus on high development efficiency, Eko simplifies the creation of multi-step workflows, enabling users to integrate and automate tasks across platforms. It provides a unified interface for managing agents, offering... -
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Primitive UI
A front-end design toolkit for developing web apps
...Headings all have the same line height and margins, and only the font size is individually defined. The blockquote is set to have a left border, with the browser default padding removed. A citation will be right-aligned and italicized. -
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hithesis
LaTeX thesis template package for Harbin Institute of Technology
...It provides class files and examples that handle title pages, abstracts in multiple languages, acknowledgments, lists of figures/tables, symbols, and properly styled chaptering. The template includes bibliography settings and citation styles that conform to school rules, along with ready-made environments for formulas, algorithms, and code. It supports Chinese and English typesetting, sensible defaults for fonts, and modern engines like XeLaTeX for robust CJK support. Cross-references, numbering, and page layout are automated, reducing the risk of last-minute formatting errors before submission. ... -
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BlogHelper
Helps user write blog content and entries
A tray assistant that helps domestic users to write, publish local articles to mainstream blog platforms (Zhihu, Jianshu, Blog Park, CSDN, SegmentFault, Nuggets, Open Source China) with one click, upload clipboard pictures to Tubed (Sina, Github, Picture Shell, Tencent Cloud, Alibaba Cloud, Youpai Cloud, Qiniu Cloud). A little assistant that does not have any interface and is only stored in the system tray, to help more people write better! One-click publishing of local articles to Zhihu,... -
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Pro-statTarget is Portable Version and standalone software, provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics. Author: Hemi Luan Maintainer: Hemi Luan Citation (from within R, enter citation("statTarget")): Luan H, Ji F, Chen Y, Cai Z (2018). “statTarget: a streamlined tool for signal drift correction and interpretations of quantitative mass spectrometry-based omics data.” Analytica Chimica Acta, 1036, 66-72.
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ResearchWheel
Research the web without constantly switching tabs.
...With middle click open a wheel with many available actions: 🎓 North | Google Scholar - Search selected text or the webpage title 🧬 North-East |PubMed - Search selected text or the webpage title 📝 East | Append Note - Save selected text to the workspace 📚 South-East |Citation - Generate and copy a citation 📂 South | Workspace - Open the research sidebar 🌐 South-West |Translate - Translate webpage content 🔗 West | Title + URL - Copy a clean Markdown link 📋 North-West | Quote + Source - Copy selected text with source attribution -
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Here, we developed a topology-driven scaffold design model, EpiTopoFold, that systematically explores protein secondary-structure arrangements to identify optimal scaffolds for discontinuous epitope segments. Citation: Ma, Y.F., Yin, G.H., Pan, Y., and Liu, Y. (2026). Intelligent antigen design combined with yeast display enhances targeted immune responses. Briefings in Bioinformatics 27, bbag393.
