Search Results for "taxonomy" - Page 2
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Showing 70 open source projects for "taxonomy"
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Fine-grained Arabic Named Entity Corpora
Fine-grained Arabic Named Entity Corpora
The gold-standard and automatically-developed fine-grained Arabic named entity corpora are resources created by annotating Named Entities into 50 fine-grained classes. The annotation uses two-levels taxonomy in which an entity has been annotated into coarse- and fine-grained classes. A) Manually gold-standard: 1) WikiFANE_Gold: Gold standard Wikipedia-based Fine-grained Arabic Named Entity Corpus, ~500K tokens and 2) NewsFANE_Gold: Gold standard Newswire-based Fine-grained Arabic... -
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Arron-IMSA
Integrated Metagenomic Sequence Analysis for Next Gen Datasets
We present Integrated Metagenomic Sequence Analysis (IMSA), a flexible, fast, and robust computational analysis pipeline that is available for public use. IMSA takes input sequence from high throughput datasets and uses a user-defined host database to filter out host sequence. IMSA then aligns the filtered reads to a user-defined universal database to characterize exogenous reads within the host background. IMSA assigns a score to each node of the taxonomy based on read frequency, and can... -
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TopiaryExplorer has moved to GitHub. Find the new project info page here: https://github.com/qiime/Topiary-Explorer. If you need help or would like to add a bug/feature request, please do so there.
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Vanator-CVR
A metagenomics & virus discovery pipeline
Vanator (Virus Alignment, de Novo Assembly and Taxonomy On Reads) is a Perl pipeline utilising a large variety of common alignment, assembly and analysis tools to assess the metagenomic profiles of Illumina deep sequencing samples. The emphasis is on the discovery of novel viruses in clinical and environmental samples. The philosophy behind Vanator is described by Jarrett et al (2013) http://www.ncbi.nlm.nih.gov/pubmed/23296970 -
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Constellio Enterprise Search engine
Open source Search Engine and Enterprise Search
Constellio is an enterprise search engine that allows companies to search all their organization's information through a single interface (Web, CRM, ERP, ECM, Mail etc.). Constellio is Based on Apache Solr and Google Search Appliance's connector. Constellio has a powerful web crawler. -
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TANGO is one of the most accurate tools for the taxonomic assignment of Next Generation Sequencing reads using multiple reference taxonomy
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TaxoAssignement
Taxonomic assignement of sequences
TANGO is one of the most accurate tools for the taxonomic assignment of Next Generation Sequencing reads using multiple reference taxonomy -
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RandomTaxonomy
Random taxonomy tree generation
This program generates a random tree from an existing tree (typically a taxonomy such as Greengene) by resampling. The global topology of the new tree (number of levels, number of nodes) is preserved. -
Red Hat Ansible Automation Platform on Microsoft AzureDeploy Red Hat Ansible Automation Platform on Microsoft Azure for a strategic automation solution that allows you to orchestrate, govern and operationalize your Azure environment.
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u/sbmv2012
Taxonomy assignment of metazoans using a python based pipeline
The aim of this project is to create an automated pipeline for taxonomic assignment of DNA sequences obtained from environmental samples. We develop a series of python scripts to process the raw sequence data obtained from benthic environmental samples and to taxonomical assignment of these sequences and finally to integrate all data in a relational database. -
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DeltaQt
Parser for DELTA files (Qt, C++)
DeltaQt is part of the FreeDelta project and aims to implement a parser for DELTA (DEscription Language for TAxonomy) files using the Qt core framework. DeltaQt is a library intended to be incorporated into other applications that require the ability to parse DELTA files. -
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The ExcelXbrlGen tool is a Data Modeler developed in order to facilitate creation of XBRL taxonomies according to the draft EuroFiling architecture out of the Data Points Model (DPM) in MS Excel format as an Excel add-in.
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A Tool to update an XBRL instance document from one version of a taxonomy to another making use of versioning information contained in a Versioning Report
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Dynamic multi-channel multi-taxonomy W3c standard compliant Content Management System with distributed editing and streaming support developed with XML/XSL and Java technologies (based upon HippoCMS).
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Data mining tool for sequences (e.g. trajectories on a map, visited web pages, etc.) that creates a succinct description of the sequences, given a taxonomy (e.g. regions and sub-regions in the map, categories and sub-categories of pages, etc.).
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SQL file and code for finding the categories and taxonomy of Wikipedia. Includes source code. Go to Downloads to get both.
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cangsdb
a stand-alone web-based database tool for processing, managing and ana
... researchers to retrieve sample information and primers and barcodes information from any individual data set or from a combination of data set. It also provides interface to update sample information as well as taxonomic classification assigned by CANGS taxonomy analysis pipeline and delete any data set -
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Build & search lucene indexes of higher taxonomy. Incorporate the Java JAR file into your application to take advantage of built indexes.
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Course Design Center is a project based on Drupal CMS. The project is a collection of Drupal module extensions and utilities for handling collaborative course design online supporting bloom's taxonomy and outcome based design
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One area of functionality all websites should have at their core, is the content management system (CMS). The CMS is like an eco-system for a website, delivering the design, layout, content and function.
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ITMM, developed by the IASC Foundation XBRL Team, is a GWT based web application, which allows to browse and combine XBRL Taxonomy modules. It therefore combines XML, XBRL and Java related technologies. Visit http://xbrl-ifrs.org/ITMM to see ITMM working
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The goal of this project is to build a very large ontology. What is intended is a multiple inheritence taxonomy with properties. Usual ontologies like OpenCyc or ThoughTreasure weights a few megabytes. The project will build a 100 megabyte ontology.
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This is a system to administrate series to be downloaded or to be stored in discs, it is designed to have an easy to follow taxonomy and to be adapted to any website related with tv series or another multimedia.
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A PHP webapp to upload taxonomic checklists as Excel or CSV files to be served as TDWG TCS XML/RDF. It can handle multiple checklists, has a Tapir light webservice and a taxonomic tree of species names created from taxonomy in a checklist can be browsed.