Search Results for "clustering algorithm matlab" - Page 2
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Showing 182 open source projects for "clustering algorithm matlab"
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MultiSpecEPR
MultiSpec EPR handles and present several spectra 1D and 2D
MultiSpec EPR is a program made to handle and to present several spectra (up to 4000) simultaneously or one by one as well as EPR spectra with two dimensions. It loads spectra from Bruker EPR instruments. It has a new algorithm for automatic peak picking which is very efficient and a very fast and accurate line fitting. It makes colorful figures that can be transferred directly to the scientific articles of one or multiple spectra. Save txt tables of the peaks and integrals that can... -
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RAFTS³G
Rapid Alignment Free Tool for Sequences Similarity Search to Groups
| RAFTS3G - Rapid Alignment Free Tool for Sequences Similarity Search to Groups| % Clustering algoritm to create homology clusters based on RAFTS3 (VIALLE, R. A.) % More informations about RAFTS3 in: https://sourceforge.net/projects/rafts3/ % Professional and Technical Education Sector from the Federal University of Paraná - Bioinformatic Lab. % Federal of Paraná University - UFPR % Dr. Alcides Vieira Arco-verde street, 1225 % CEP: 81520-260 Jardim das Américas % Curitiba... -
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MTCNN Face Detection Alignment
Joint Face Detection and Alignment
MTCNN_face_detection_alignment is an implementation of the “Joint Face Detection and Alignment using Multi-task Cascaded Convolutional Networks” algorithm. The algorithm uses a cascade of three convolutional networks (P-Net, R-Net, O-Net) to jointly detect faces (bounding boxes) and align facial landmarks in a coarse-to-fine manner, leveraging multi-task learning. Non-maximum suppression and bounding box regression at each stage. The repository includes Caffe / MATLAB code, support scripts... -
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NaveGo
NaveGo: an open source MATLAB/GNU Octave toolbox for processing integr
NaveGo is an open source MATLAB/GNU Octave toolbox designed for processing integrated navigation systems, simulating inertial sensors and GNSS receivers, and profiling inertial sensors using methods like Allan variance—providing a community-driven simulation framework for navigation system design and analysis. I am reaching out to share an important update regarding the NaveGo project. Due to a shift in both my professional career and personal interests away from navigation systems, I have made... -
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Blueprint XAS is a Matlab-based suite designed for the processing and analysis of near-edge x-ray absorption spectroscopy (XAS) data. The suite is designed primarily to assist users in exploring reasonable fit solutions while minimizing user bias.
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MScDB
A Mass Spectrometry Centric Protein Sequence Database for Proteomics
... theoretical and empirical information from large-scale proteomic data to generate a mass spectrometry centric protein sequence database (MScDB). The core modules of MScDB are an in-silico proteolytic digest and a peptide centric clustering algorithm that groups protein sequences that are indistinguishable by mass spectrometry. -
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Stoner-Wohlfarth hysteresis
Hysteresis of ellipsoidal single domain ferromagnetic particle.
Magnetization process of a single domain ellipsoidal particle: SW_particle. Magnetization of isotropic bulk material composed of 100 particles: SW_bulk. The details of the algorithm are described in the paper: 1. Zsolt Szabó, Amália Iványi, Computer-aided simulation of Stoner–Wohlfarth model, Journal of Magnetism and Magnetic Materials, Volumes 215–216, 2, June 2000, Pages 33-36. 2. Zsolt Szabó, Amália Iványi, Preisach Type Bulk Vector Hysteresis Model from Generalized... -
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Hierarchical DP
Source code of DC-HDP
This Matlab code is used for demonstration of the clustering results of DP, LC-DP and DC-HDP. Written by Ye Zhu, Deakin University, May 2021, version 1.0. This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Zhu, Y., Ting, K.M., Jin, Y. and Angelova, M., 2021, August. Hierarchical clustering that takes advantage of both density-peak and density-connectivity. Information Systems. The preprint... -
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Smart Algorithm
Repository implementing a variety of intelligent algorithms
Smart-Algorithm is a repository implementing a variety of intelligent / metaheuristic optimization algorithms (e.g. Genetic Algorithm, Ant Colony, Particle Swarm, Immune Algorithm). The implementations are provided in multiple languages (Java, Python, MATLAB). The repository’s aim is to offer reference implementations of “smart” algorithms for tasks like route planning, optimization, or algorithm learning. Particle Swarm Optimization (PSO) implementations in multiple languages. Immune Algorithm... -
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yafu
Automated integer factorization
Check yafu on github for the latest code. YAFU (with assistance from other free software) uses the most powerful modern algorithms (and implementations of them) to factor input integers in a completely automated way. The automation within YAFU is state-of-the-art, combining factorization algorithms in an intelligent and adaptive methodology that minimizes the time to find the factors of arbitrary input integers. Most algorithm implementations are multi-threaded, allowing YAFU to fully... -
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AmPEP and AxPEP
Sequence-based Antimicrobial Peptide Prediction by Random Forest
Antimicrobial peptides (AMPs) are promising candidates in the fight against multidrug-resistant pathogens due to its broad range of activities and low toxicity. However, identification of AMPs through wet-lab experiment is still expensive and time consuming. AmPEP is an accurate computational method for AMP prediction using the random forest algorithm. The prediction model is based on the distribution patterns of amino acid properties along the sequence. Our optimal model, AmPEP with 1:3 data... -
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This Matlab code is used for demonstration of the effect of CDF-TS as a preprocessing method to transform data. Written by Ye Zhu, Deakin University, April 2021, version 1.0. This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Zhu, Y., Ting, K.M., Carman, M. and Angelova, M., 2021, April. CDF Transform-and-Shift: An effective way to deal with datasets of inhomogeneous cluster densities. Pattern...
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Machine Learning Octave
MatLab/Octave examples of popular machine learning algorithms
This repository contains MATLAB / Octave implementations of popular machine learning algorithms, along with explanatory code and mathematical derivations, intended as educational material rather than production code. Implementations of supervised learning algorithms (linear regression, logistic regression, neural nets). The author’s goal is to help users understand how each algorithm works “from scratch,” avoiding black-box library calls. Code written so as to expose and comment on mathematical... -
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VOP post-processing
Post-processing algorithms for SAR compression
Here we introduce to algorithms for post-processing of VOP sets. Algorithm 1 reduces the Overestimation for a given set of VOPs. Especially useful to reduce the overestimation in VOP sets calculated with the compression algorithms by Lee et al. and Orzada et al. Algorithm 2 tests a given set of VOPs for redundancy. It can be used to reduce the number of VOPs in a dataset produced by Eichfelder and Gebhardt's algorithm. Especially useful when you have a vendor provided VOP set only. -
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SAR Synthetic Aperture Radar
Collection of MATLAB codes, simulations, and summaries
This repository is a collection of MATLAB codes, simulations, and summaries related to Synthetic Aperture Radar (SAR), InSAR, and PolSAR. The author compiled implementations of classic SAR imaging algorithms (e.g. Range-Doppler (RD) algorithm, Chirp Scaling (CS) algorithm), synthetic scenes, InSAR (interferometric) simulation including multiple terrain types (flat, conical), and polarization calibration techniques (Whitt, PARC, Quegan, Ainsworth). The readme states that these were research... -
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Maxwell's-equations-derived-optimization
This project provide an open-source matlab code for MEDO.
... bar is treated as the region to be optimized, which is of the same shape with the objective function. According to the numerical tests, MEDO is proved to an effective optimization algorithm for both unimodal and multimodal functions. This version is created with MATLAB R2017a. -
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PyArmadillo
linear algebra library for Python
PyArmadillo - streamlined linear algebra library for Python, with emphasis on ease of use. Alternative to NumPy / SciPy. * Main page: https://pyarma.sourceforge.io * Documentation: https://pyarma.sourceforge.io/docs.html * Bug reports: https://pyarma.sourceforge.io/faq.html * Git repo: https://gitlab.com/jason-rumengan/pyarma -
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Isolation Similarity
aNNE similarity based on Isolation Kernel
Demo of using aNNE similarity for DBSCAN. Written by Xiaoyu Qin, Monash University, March 2019, version 1.0 This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Qin, X., Ting, K.M., Zhu, Y. and Lee, V.C., 2019, July. Nearest-neighbour-induced isolation similarity and its impact on density-based clustering. In Proceedings of the AAAI Conference on Artificial Intelligence (Vol. 33, pp. 4755-4762... -
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Relative Overestimation VOP
VOP compression for MRI with overestimation control
**** This work is outdated! For better compression and speed use these: ***** https://sourceforge.net/projects/enhanced-sar-compression/ Virtual Observation Points SAR compression. Contains multiple Algorithms: Compression according to Eichfelder et al. and Lee et al. The Lee algorithm is enhanced by including overestimation control to reduce maximum relative overestimation. All algorithms are implemented in Matlab and were optimized for enhanced speed. Needs Matlab R2016b at least... -
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A2RMS Algorithm
Implementation of the A2RMS Algorithm in Matlab
Implementation of the A2RMS Algorithm for univariate densities defined for real values. -
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LIPRAS, Line-Profile Analysis Software
Peak fitting GUI for diffraction data
LIPRAS v466 LIPRAS [LEEP-ruhs], short for Line-Profile Analysis Software, is a graphical user interface for least-squares fitting of Bragg peaks in powder diffraction data. For any region of the inputted data, user can choose which profile functions to apply to the fit, constrain profile functions, and view the resulting fit in terms of the profile functions chosen. If you use LIPRAS for your research, please cite it: Giovanni Esteves, Klarissa Ramos, Chris M. Fancher, and Jacob L.... -
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Coursera Machine Learning
Coursera Machine Learning By Prof. Andrew Ng
CourseraMachineLearning is a personal collection of resources, notes, and programming exercises from Andrew Ng’s popular Machine Learning course on Coursera. It consolidates lecture references, programming tutorials, test cases, and supporting materials into one repository for easier review and practice. The project highlights fundamental machine learning concepts such as hypothesis functions, cost functions, gradient descent, bias-variance tradeoffs, and regression models. It also organizes... -
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weka-MTreeClusterer
Flat clustering algorithm based on MTrees implemented for weka.
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DSeg software
A MATLAB program to segment filamentous bacteria and hyphae structures
The analysis of microscopy image has been the basis to our current understanding of the cellular growth and morphogenesis. The quantitative evaluation of morphological changes in the biological processes is therefore important to characterize cell structures. Here we present an image analysis tool DSeg to overcome the difficulties in finding complicated elongated cell shapes by using time-lapse data and cell morphological constraints. A fast binary level-set based algorithm is implemented... -
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XBioSiP
RTL & Behavioral Models (Approx.) of Pan-Tompkins Application Stages
The "XBioSiP" library contains the RTL (VHDL) and behavioral (MATLAB) models of the approximate adders and multipliers used for designing approximate versions of the bio-signal processing Pan-Tompkins algorithm, including all of its application stages. This work was published in DAC 2019. In case of usage please refer to: B. S. Prabakaran, S. Rehman, M. Shafique, “XBioSiP: A Methodology for Approximate Bio-Signal Processing at the Edge”, IEEE/ACM 56th Design Automation Conference (DAC...
