Search Results for "clustering algorithm matlab"
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Showing 75 open source projects for "clustering algorithm matlab"
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DeepSqueak
DeepSqueak Using Machine Vision to Accelerate Bioacoustics Research
Using Machine Vision to Accelerate Bioacoustics Research. -
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PlatEMO
Evolutionary multi-objective optimization platform
Evolutionary multi-objective optimization platform. PlatEMO consists of a number of MATLAB functions without using any other libraries. Any machines able to run MATLAB can use PlatEMO regardless of the operating system. PlatEMO includes more than ninety existing popular MOEAs, including genetic algorithm, differential evolution, particle swarm optimization, memetic algorithm, estimation of distribution algorithm, and surrogate model-based algorithm. Most of them are representative algorithms... -
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hctsa
Highly comparative time-series analysis
hctsa is a Matlab software package for running highly comparative time-series analysis. It extracts thousands of time-series features from a collection of univariate time series and includes a range of tools for visualizing and analyzing the resulting time-series feature matrix. -
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TIGRE
TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox
TIGRE is an open-source toolbox for fast and accurate 3D tomographic reconstruction for any geometry. Its focus is on iterative algorithms for improved image quality that have all been optimized to run on GPUs (including multi-GPUs) for improved speed. It combines the higher-level abstraction of MATLAB or Python with the performance of CUDA at a lower level in order to make it both fast and easy to use. TIGRE is free to download and distribute: use it, modify it, add to it, and share it. Our... -
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Armadillo
fast C++ library for linear algebra & scientific computing
* Fast C++ library for linear algebra (matrix maths) and scientific computing * Easy to use functions and syntax, deliberately similar to Matlab / Octave * Uses template meta-programming techniques to increase efficiency * Provides user-friendly wrappers for OpenBLAS, Intel MKL, LAPACK, ATLAS, ARPACK, SuperLU and FFTW libraries * Useful for machine learning, pattern recognition, signal processing, bioinformatics, statistics, finance, etc. * Downloads: http://arma.sourceforge.net... -
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GNSS-SDR
An open source software-defined GNSS receiver
An open source software-defined Global Navigation Satellite Systems (GNSS) receiver written in C++ and based on the GNU Radio framework. -
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High-performance package for SemiDefinite Programs The software SDPA (SemiDefinite Programming Algorithm) is one of the most efficient and stable software packages for solving SDPs based on the primal-dual interior-point method.
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iElectrodes
intracranial electrodes localization toolbox
iElectrodes is a free and open-source Matlab® toolbox to obtain intracranial electrode coordinates from MRI and CT images. Precise and reliable localization can be achieved fast and in a semiautomatic way with minimal user intervention. The toolbox works with ECoG (subdural grids and strips) and SEEG (depth) electrodes. The new GridFit algorithm can precisely localize high-density electrodes (up to 3mm). Brain parcellations (atlas) and surfaces can be imported to aid 2D and 3D visualization... -
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Enhanced SAR Compression
VOP Algorithm with improved speed and compression
This work is described in: Orzada S, Fielder TM, Quick HH, Ladd ME, "A local SAR compression algorithm with improved compression, speed and flexibility", https://doi.org/10.1002/mrm.28739. This new algorithm is an iterative expansion of the exisisting local SAR compression algorithm for MRI proposed by Lee et al. ( https://doi.org/10.1002/mrm.23140) The number of VOPs is approximately halved with the new algorithm, while at the same time the compression time is reduced with speed-up... -
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RAFTS³G
Rapid Alignment Free Tool for Sequences Similarity Search to Groups
| RAFTS3G - Rapid Alignment Free Tool for Sequences Similarity Search to Groups| % Clustering algoritm to create homology clusters based on RAFTS3 (VIALLE, R. A.) % More informations about RAFTS3 in: https://sourceforge.net/projects/rafts3/ % Professional and Technical Education Sector from the Federal University of Paraná - Bioinformatic Lab. % Federal of Paraná University - UFPR % Dr. Alcides Vieira Arco-verde street, 1225 % CEP: 81520-260 Jardim das Américas % Curitiba... -
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Blueprint XAS is a Matlab-based suite designed for the processing and analysis of near-edge x-ray absorption spectroscopy (XAS) data. The suite is designed primarily to assist users in exploring reasonable fit solutions while minimizing user bias.
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GRAMPC
A gradient-based augmented Lagrangian framework for embedded NMPC
GRAMPC is a nonlinear MPC framework that is suitable for dynamical systems with sampling times in the (sub)millisecond range and that allows for an efficient implementation on embedded hardware. The algorithm is based on an augmented Lagrangian formulation with a tailored gradient method for the inner minimization problem. GRAMPC is implemented in plain C with an additional interface to C++ and MATLAB/Simulink. The basic structure and usage of GRAMPC are described in the documentation... -
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Stoner-Wohlfarth hysteresis
Hysteresis of ellipsoidal single domain ferromagnetic particle.
Magnetization process of a single domain ellipsoidal particle: SW_particle. Magnetization of isotropic bulk material composed of 100 particles: SW_bulk. The details of the algorithm are described in the paper: 1. Zsolt Szabó, Amália Iványi, Computer-aided simulation of Stoner–Wohlfarth model, Journal of Magnetism and Magnetic Materials, Volumes 215–216, 2, June 2000, Pages 33-36. 2. Zsolt Szabó, Amália Iványi, Preisach Type Bulk Vector Hysteresis Model from Generalized... -
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Hierarchical DP
Source code of DC-HDP
This Matlab code is used for demonstration of the clustering results of DP, LC-DP and DC-HDP. Written by Ye Zhu, Deakin University, May 2021, version 1.0. This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Zhu, Y., Ting, K.M., Jin, Y. and Angelova, M., 2021, August. Hierarchical clustering that takes advantage of both density-peak and density-connectivity. Information Systems. The preprint... -
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This Matlab code is used for demonstration of the effect of CDF-TS as a preprocessing method to transform data. Written by Ye Zhu, Deakin University, April 2021, version 1.0. This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Zhu, Y., Ting, K.M., Carman, M. and Angelova, M., 2021, April. CDF Transform-and-Shift: An effective way to deal with datasets of inhomogeneous cluster densities. Pattern...
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VOP post-processing
Post-processing algorithms for SAR compression
Here we introduce to algorithms for post-processing of VOP sets. Algorithm 1 reduces the Overestimation for a given set of VOPs. Especially useful to reduce the overestimation in VOP sets calculated with the compression algorithms by Lee et al. and Orzada et al. Algorithm 2 tests a given set of VOPs for redundancy. It can be used to reduce the number of VOPs in a dataset produced by Eichfelder and Gebhardt's algorithm. Especially useful when you have a vendor provided VOP set only. -
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Isolation Similarity
aNNE similarity based on Isolation Kernel
Demo of using aNNE similarity for DBSCAN. Written by Xiaoyu Qin, Monash University, March 2019, version 1.0 This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Qin, X., Ting, K.M., Zhu, Y. and Lee, V.C., 2019, July. Nearest-neighbour-induced isolation similarity and its impact on density-based clustering. In Proceedings of the AAAI Conference on Artificial Intelligence (Vol. 33, pp. 4755-4762... -
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Relative Overestimation VOP
VOP compression for MRI with overestimation control
**** This work is outdated! For better compression and speed use these: ***** https://sourceforge.net/projects/enhanced-sar-compression/ Virtual Observation Points SAR compression. Contains multiple Algorithms: Compression according to Eichfelder et al. and Lee et al. The Lee algorithm is enhanced by including overestimation control to reduce maximum relative overestimation. All algorithms are implemented in Matlab and were optimized for enhanced speed. Needs Matlab R2016b at least... -
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A2RMS Algorithm
Implementation of the A2RMS Algorithm in Matlab
Implementation of the A2RMS Algorithm for univariate densities defined for real values. -
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LIPRAS, Line-Profile Analysis Software
Peak fitting GUI for diffraction data
LIPRAS v466 LIPRAS [LEEP-ruhs], short for Line-Profile Analysis Software, is a graphical user interface for least-squares fitting of Bragg peaks in powder diffraction data. For any region of the inputted data, user can choose which profile functions to apply to the fit, constrain profile functions, and view the resulting fit in terms of the profile functions chosen. If you use LIPRAS for your research, please cite it: Giovanni Esteves, Klarissa Ramos, Chris M. Fancher, and Jacob L.... -
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DSeg software
A MATLAB program to segment filamentous bacteria and hyphae structures
The analysis of microscopy image has been the basis to our current understanding of the cellular growth and morphogenesis. The quantitative evaluation of morphological changes in the biological processes is therefore important to characterize cell structures. Here we present an image analysis tool DSeg to overcome the difficulties in finding complicated elongated cell shapes by using time-lapse data and cell morphological constraints. A fast binary level-set based algorithm is implemented... -
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Clustering by Shared Subspaces
Grouping Points by Shared Subspaces for Effective Subspace Clustering
These functions implement a subspace clustering algorithm, proposed by Ye Zhu, Kai Ming Ting, and Mark J. Carman: "Grouping Points by Shared Subspaces for Effective Subspace Clustering", Published in Pattern Recognition Journal at https://doi.org/10.1016/j.patcog.2018.05.027 -
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Invariant curve calculations in Matlab
Calculating stable & unstable curves for 2 dimensional maps in matlab.
This is an implementation that follows closely the algorithm for calculating stable curves, described by J. P. England, B. Krauskopf, H. M. Osinga in the paper "Computing One-Dimensional Stable Manifolds and Stable Sets of Planar Maps without the Inverse" published in SIAM J. APPLIED DYNAMICAL SYSTEMS 3.2 (2004), 161-190. The package also contains an implementation for calculating the unstable curves which is based on the paper "Growing 1D and Quasi-2D Unstable Manifolds of Maps" by Bernd... -
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De_Lux
Deconvolution of luminescence cross-talk in microplate reader data
An algorithm to deconvolve the luminescence cross-talk in high-throughput gene expression profiling to recover the true luminescence activity of a microplate. -
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Distance Scaling
A Distance Scaling Method to Improve Density-Based Clustering
These functions implement a distance scaling method, proposed by Ye Zhu, Kai Ming Ting, and Maia Angelova, "A Distance Scaling Method to Improve Density-Based Clustering", in PAKDD2018 proceedings: https://doi.org/10.1007/978-3-319-93040-4_31.