Search Results for "genetic algorithm c" - Page 17
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Showing 1385 open source projects for "genetic algorithm c"
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HH-Evolver
A framework for domain-specific, hyper-heuristic evolution
HH-Evolver is a framework for domain-specific, hyper-heuristic evolution. HH-Evolver automates the design of domain-specific heuristics for planning domains. Hyper-heuristics generated by our tool can then be used with combinatorial search algorithms such as A* and IDA* for solving problems of the given domain. -
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Glycosylation Microviewer
An application create, simulate and adjust N-linked glycosylation.
...The model used in the application is based on two significant papers: 1.1997 Pablo Umana, James E.Bailey A Mathematical Model of N-linked Glycoform Biosynthesis. 2.2005 Frederick J.Krambeck, Michael J.Betenbaugh A Mathematical Model of N-linked Glycosylation. The application allow to simulate the network in dynamic form with various ODE solvers(Euler, Runge-Kutta etc). Genetic Algorithm is used to adjust the kinetic parameters of Michaelis-Menten equations in glycosylation reaction network. A dynamic plot is supplied to show the value of mole amout and mole fraction of various glycoform. Thanks to Alexey Balakin and Alessandro Presta. Alexey Balakin supply mathgl(https://sourceforge.net/projects/mathgl) that make the implementation of dynamic plot in this application easily. ... -
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RT-alignment
Graph-based time alignment algorithms for multiple LC-MS datasets
Liquid chromatography coupled to mass spectrometry (LC-MS) is the dominant technological platform for proteomics. An LC-MS analysis of a complex biological sample can be visualized as a “map” of which the positional coordinates are the mass-to-charge ratio (m/z) and chromatographic retention time (RT) of the chemical species profiled. Label-free quantitative-proteomics requires the alignment and comparison of multiple LC-MS maps to ascertain the reproducibility of experiments or reveal... -
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SWAPHI: Smith-Waterman on Intel Xeon Phi
The first protein sequence database search on shared-host Xeon Phis
The first parallel algorithm to accelerate the Smith-Waterman protein database search on shared-host multiple Intel Xeon Phi coprocessors. By searching against the UniProtKB/TrEMBL database, SWAPHI achieves a performance of up to 58.8 billion cell updates per second (GCUPS) on a single Xeon Phi and up to 228.4 GCUPS on four Xeon Phis. -
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Virus QSP Modeling
C++ and Python code for simulating RNA virus replication
Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files. -
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Cyberphantom Alfa Colony
AI new tipe
This is an experimental project whose main objective is the creation of artificial intelligence (AI) new tipe. At the core of this idea is the use of special genetic algorithm that emulates the single-celled organism. The colony of such cybernetic organisms can give rise to a "reasonable" network that have a huge intellect and computing power. -
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CUDAlign
CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs
CUDAlign is a tool able to align pairwise DNA sequences of unrestricted size in CUDA GPUs, using the Smith-Waterman algorithm combined with Myers-Miller. It produces the optimal alignment of 1 million base sequences in 45 seconds using a GTX 560 Ti. Many optimizations are being developed for this software. Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences using GPU.... -
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KLFM C++ implementation
Kernighan-Lin Fiduccia-Mattheyses algorithm implementation
Project was moved to GitHub, pls see newver version here https://dmitrymironov.github.io C++ implementation of a popular Kernighan-Lin Fiduccia-Mattheyses algoritm, first published in "A Linear Time Heuristic for Network Partitions" paper. -
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gametes
Generate complex SNP models and heterogeneous datasets
Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. -
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MatlabSimulink2CPP
Demo of Simulink to C++ C or HDL FGA for HFT potential
Video and files download for Visual trading idea to C++ or FPGA HFT Meetup File download sample: test model (Matlab 2014b with Visual Studio 2013 C++ project generated) Powerpoint MATLAB SIMULINK http://quantlabs.net/blog/2015/04/video-and-files-download-for-visual-trading-idea-to-c-or-fpga-hft-meetup/ -
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Neural Libs
Neural network library for developers
This project includes the implementation of a neural network MLP, RBF, SOM and Hopfield networks in several popular programming languages. The project also includes examples of the use of neural networks as function approximation and time series prediction. Includes a special program makes it easy to test neural network based on training data and the optimization of the network. -
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video encryption
Light video encryption technique (source code)
Light encryption algorithm (technique) that can be used in real time video encryption. (source code has been uploaded; You can read attached pdf file for more details about the presented encryption technique ! ) -
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SplitMEM
Graphical pan-genome analysis with suffix skips
With the rise of improved sequencing technologies, genomics is expanding from a single reference per species paradigm into a more comprehensive pan-genome approach with multiple individuals represented and analyzed together. Here we introduce a novel O(n log n) time and space algorithm called splitMEM, that directly constructs the compressed de Bruijn graph for a pan-genome of total length n. To achieve this time complexity, we augment the suffix tree with suffix skips, a new construct that... -
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This tool is made to score machine translation performance with the TER metric. This code is based on Snover's algorithm.
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outbreaker
outbreaker
A R package for disease outbreak reconstruction using epidemiological and genetic data. -
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GenEng
Copyright (c) 2015 Walter Milner. License is GPL version 3
This is a research project to develop software which can predict changes in a stock price. The basis is genetic engineering. We start with a population of 'programs' and historical data about price changes of some stocks. We rank the programs by their accuracy in price changes. We cull the worst. We breed the rest. And we repeat that for many generations. This project is intended to discover the effectiveness of this approach. -
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quickGA-m
A quick (messy?) genetic algorithm to solve TSP
A quick genetic algorithm to solve TSP scenarios. Written in Matlab. Circa June 2012. -
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Genetic Algorithms Engine - Blackjack
A genetic algortihm engine that evolves blackjack basic strategy.
...The code was written in C++, using MS Visual Studio 6.0 and MS Visual Source Safe 6.0. The genetic algorithm engine supports various mutation rates, ranked parental selection, stochastic sampling parental selection, cyclic crossover, crossover at each gene, cloning the best individual each generation, and creating random individuals each generation. To use the genetic algorithm engine to search for a different problem's solution, one needs to program a fitness function, the project settings, and a few virtual functions. -
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Image Filters Generation
Generation of Image Filters using Genetic Algorithms.
https://sourceforge.net/p/wiretransferbankaccount/wiki/Home/ this project is provided "AS IS" without warranties of any kind. -
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EurekaOptima is a framework for optimization containing the implementation of several algorithms like Genetic Algorithm (GA), Clonal Selection Algorithm (CLONALG), Grammatical Evolution (GE), Differential Evolution (DE), and Evolution Strategy (ES).
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ESTReMo
An evolutionary simulator of transcription regulatory networks
ESTReMo is a genetic algorithm-based simulator to explore the evolution of transcription factors and their binding motifs on realistic genomic backgrounds. -
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Implementation of Kohonen 's algorithm for mapping colors randomly generated after the 3 basic components: red, green and blue in C#
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ezSIFT
An easy-to-use standalone SIFT library written in C/C++
*************************************************************************** Updated 06/28/2018 The ezSift project has moved to https://github.com/robertwgh/ezSIFT *************************************************************************** The SIFT (scale-invariant feature transform) algorithm is considered to be one of the most robust local feature detector and description methods. Most of the open-source SIFT implementations rely on some 3rd-party libraries. Some of them even rely on a few different large libraries. These dependencies make the installation, compilation and usage not easy. The ezSIFT library provides a standalone and lightweight SIFT implementation written in C/C++. ... -
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Ginors Sort
sorting algorithm for binary keys
in-place sorting algorithm with O(n*log(k)) time komplexity. The data have to be the structure: struct { unsigned (char/short/int/long); [...] } -
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Face Recognition System
Face Recognition System Matlab source code
Research on automatic face recognition in images has rapidly developed into several inter-related lines, and this research has both lead to and been driven by a disparate and expanding set of commercial applications. The large number of research activities is evident in the growing number of scientific communications published on subjects related to face processing and recognition. Index Terms: face, recognition, eigenfaces, eigenvalues, eigenvectors, Karhunen-Loeve algorithm.
