Search Results for "genetic algorithm c"
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Showing 78 open source projects for "genetic algorithm c"
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1
Genetic algorithm for EOM
A python GA code for EOM in SAXS/WAXS
Because GAjoe of ATSAS cannot deal with WAXS range, and no parameters can be modified. I made a code by myself to use GA for finding best EOM for SAXS/WAXS. The project need ATSAS crysol and a folder with multiple pdb files to use. -
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PyGAD
Source code of PyGAD, Python 3 library for building genetic algorithms
PyGAD is an open-source easy-to-use Python 3 library for building the genetic algorithm and optimizing machine learning algorithms. It supports Keras and PyTorch. PyGAD supports optimizing both single-objective and multi-objective problems. PyGAD supports different types of crossover, mutation, and parent selection. PyGAD allows different types of problems to be optimized using the genetic algorithm by customizing the fitness function. -
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X's Recommendation Algorithm
Source code for the X Recommendation Algorithm
The Algorithm is Twitter’s open source release of the core ranking system that powers the platform’s home timeline. It provides transparency into how tweets are selected, prioritized, and surfaced to users, reflecting Twitter’s move toward openness in recommendation algorithms. The repository contains the recommendation pipeline, which incorporates signals such as engagement, relevance, and content features, and demonstrates how they combine to form ranked outputs. Written primarily in... -
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pgapack, the parallel genetic algorithm library is a powerfull genetic algorithm library by D. Levine, Mathematics and Computer Science Division Argonne National Laboratory. The library is written in C. PGAPy wraps this library for use with Python.
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5
SHAP
A game theoretic approach to explain the output of ml models
...It connects optimal credit allocation with local explanations using the classic Shapley values from game theory and their related extensions. While SHAP can explain the output of any machine learning model, we have developed a high-speed exact algorithm for tree ensemble methods. Fast C++ implementations are supported for XGBoost, LightGBM, CatBoost, scikit-learn and pyspark tree models. To understand how a single feature effects the output of the model we can plot the SHAP value of that feature vs. the value of the feature for all the examples in a dataset. Since SHAP values represent a feature's responsibility for a change in the model output, the plot below represents the change in predicted house price as RM (the average number of rooms per house in an area) changes. -
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word_cloud
A little word cloud generator in Python
A little word cloud generator in Python. The code is tested against Python 2.7, 3.4, 3.5, 3.6 and 3.7. If you are using conda, you can install from the conda-forge channel. wordcloud depends on numpy and pillow. To save the wordcloud into a file, matplotlib can also be installed. If there are no wheels available for your version of python, installing the package requires having a C compiler set up. Before installing a compiler, report an issue describing the version of python and operating... -
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itom
itom - an Open Source Measurement, Automation and Evaluation Software
itom is an open source software suite for operating measurement systems, laboratory automation and data evaluation. One main application of itom is the development and operation of sensor and measurement system for instance in a laboratory environment. Therefore, the software has to be able to communicate with a wide range of different hardware systems, such as cameras or actuators and should provide a diversified and as complete as possible set of evaluation and data processing methods.... -
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LabRPS
Random phenomena generator
This is an official mirror of LabRPS. Code and release files are primarily hosted on https://github.com/LabRPS/LabRPS and mirrored here LabRPS aims to be a tool for the numerical simulation of random phenomena such as stochastic wind velocity, seismic ground motion, sea surface ... etc. It can be in a wide range of uses around engineering, such as random vibration or vibration fatigue in mechanical engineering, buffeting analysis in bridge engineering.... LabRPS is mainly to assist... -
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Advanced Trigonometry Calculator
Precision Trigonometry: Advanced Calculator for Complex Math
Advanced Trigonometry Calculator is equipped with a user-friendly interface that allows for easy input of problems and instant computation. Professionals such as engineers who need to perform advanced trigonometric calculations in their work will find this tool extremely useful. More info by clicking below: https://advantrigoncalc.sourceforge.io/ Advanced Trigonometry Calculator was only and always only developed by the Portuguese Renato Alexandre dos Santos Freitas. Also author of... -
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The Art of Programming
A collection of practical tips can be found at the bottom of this page
The Art of Programming (Second Edition) is a curated collection of programming problems and solutions originally derived from the Microsoft 100 Interview Questions blog series, later refined into a long-running tutorial and ultimately a published book. Created by July, the series began in 2010 and has since evolved into an in-depth exploration of algorithmic thinking, data structures, and coding interview preparation. The repository brings together 42 classic programming problems from the... -
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Sudoku Maker is a generator for Sudoku number puzzles. It uses a genetic algorithm internally, so it can serve as an introduction to genetic algorithms. The generated Sudokus are usually very hard to solve -- good for getting rid of a Sudoku addiction.
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MAGeCK
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support... -
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Upscale
This program is upscaling any image by a factor 2 using an algorithm
This program is upscaling any image by a factor 2 using an algorithm of cubic interpolation. You may need to install the following libraries to run the program, tqdm, itertools, and OpenCV. -
14
Pokerbot: Pokerstars Partypoker GGPoker
Self playing pokerbot for partypoker, pokerstars and GGPoker
Please visit the wiki page for documentation how to run the bot http://www.github.com/dickreuter/Poker/ This pokerbot plays automatically on Partypoker, Pokerstars and GGPoker. It works with image recognition, montecarlo simulation and a basic genetic algorithm. The mouse is moved automatically and the bot can play for hours. All open source and you are welcome to contribute. New tables can easily be mapped with a new user interface. -
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bioweb
polyglot language framework to analyze genetic data
polyglot framework using Python/C++/JavaScript to fast develop applications to analyze biological sequences -
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levin
in-memory key value server with fuzzy search capabilities
Levin is an event-based key/value server based on radix-tree (space optimized trie). Key search can be performed with an approximate key matching algorithm based on Levenshtein edit distance. -
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As of August 2018 Spheral++ has moved to Github -- please see the current repository at https://github.com/jmikeowen/spheral We are leaving a frozen version here on SourceForge for historical reasons. Spheral++ provides a steerable parallel environment for performing coupled hydrodynamical & gravitational numerical simulations. Hydrodynamics and gravity are modelled using particle based methods (SPH and N-Body).
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Solid Python
A comprehensive gradient-free optimization framework written in Python
Solid is a Python framework for gradient-free optimization. It contains basic versions of many of the most common optimization algorithms that do not require the calculation of gradients, and allows for very rapid development using them. -
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Chronological Cohesive Units
The experimental source code for the paper
The experimental source code for the paper, "A Novel Recommendation Approach Based on Chronological Cohesive Units in Content Consuming" -
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QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
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ShaSeSha
Implementations of Shamir's Secret Sharing algorithm
Javascript, Python, C++ implementations of Shamir's Secret Sharing algorithm. This is very much a work in progress, and while the functionality is there to split and join, it needs work, cleanup, documentation, profiling and testing. It is only provided in the hopes it may be useful. I make absolutely NO guarantees or warranties, not even of merchantability, either expressed or implied, and do not make any claims about the security or reliability of this project. ... -
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Scaffold_Builder
Combining de novo and reference-guided assembly with Scaffold_builder
Scaffold_builder is software to order contigs generated by draft sequencing along a reference sequence. Gaps are filled with N's and small overlaps are aligned with Needleman–Wunsch algorithm and the consensus created with IUPAC codes. Scaffold_builder can help in the assembly and annotation of genomes by revealing what is missing and allowing targeted sequencing to close those gaps. (c) Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Please cite: "Combining de novo and reference-guided assembly with Scaffold_builder", Source Code for Biology and Medicine 2013. -
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ExAM-Exome_Analysis_And_Mining
A whole exome sequencing analysis package and its graphical interface
During the past few years, whole exome sequencing has imposed itself for genetic research, largely due to its use for detection of causative mutations responsible for Mendelian disorders. As a consequence of their power and of the rapidly decreasing cost of these technologies, massive amount of exome sequencing data are generated and becoming available to a broadening community of scientists. However, these data remain difficult to analyze and interpret by the general scientific community,... -
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MultiPlink
[UPDATE 28-10-2015] FINAL MULTIPLINK SSH LIFETIME v2.0 UP-5 "FAREWELL"
Download Link Utama: http://sourceforge.net/projects/multiplink/files/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar/download Jika di Halaman Download, Link belum tersedia, klik link alternatif : https://www.dropbox.com/s/znptxp2gxhihpax/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar?dl=0 Lalu Download & Install juga Minor... -
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A toolkit in C++ and python to process both experimental and simulation data of colloidal particles. Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1.
