Search Results for "prediction" - Page 12
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Showing 446 open source projects for "prediction"
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luciphor
Calculates phospho-site localizations
Luciphor is a program that performs phospho-site localization on MS/MS data processed by the Trans-Proteomic Pipeline (TPP). It is the first phospho-site prediction program to provide estimates for the false localization rate (FLR). The program is multithreaded and written in C++ for linux. -
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NESmapper
Prediction of CRM1-dependent nuclear export signals
Accurate prediction of leucin-rich nuclear export signals (NESs) using activity-based profiles -
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The automated Prokaryotic Annotation Pipeline was developed to generate on demand ORF prediction and functional annotation for prokaryotic genomes. A round of non-coding RNA prediction is done using various tools such as tRNA-scanSE and BLAST. Gene finding is done using a self-training, iterated glimmer3 analysis. The predicted genes are then analyzed for overlaps, and homology based evidence is gathered using a system of hidden markov model search and BLAST. Roles and gene symbols are assigned...
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caproteinstructureprediction
Contact assisted protein structure prediction
Contact assisted protein structure prediction. PDB related tools. RR related tools. -
Exact Payments delivers easy-to-integrate embedded payment solutions enabling you to rapidly onboard merchants, instantly activate a variety of payment methods and accelerate your revenue — delivering an end-to-end payment processing platform for SaaS businesses.
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Distance to Native
Prediction of distance-to-native for protein structure
Prediction of distance-to-native for protein structure using machine learning approach and physicochemical properties. -
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GLProbs
GLProbs: Aligning multiple sequences adaptively
... the best scores in almost all testings. We have also evaluated the practicability of the alignments of GLProbs by applying the tool to three biological applications, namely phylogenetic trees construction, protein secondary structure prediction and the detection of high risk members for cervical cancer in the HPV-E6 family, and the results are very encouraging. -
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Botnet Detectors Comparer
Compares botnet detection methods
Compares botnet detection methods by computing the error metrics by reading the labels on a NetFlow file. The original NetFlow should have a new column for the ground-truth label, and a new column with the prediction label for each botnet detection method. This program computes all the error metrics (TPR, TNR, FPR, FNR, Precision, Accuracy, ErrorRate, FMeasure1, FMeasure2, FMeasure0.5) and output the comparison results. It also ouputs a png plot. The program can compare in a flow-by-flow... -
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This is an interactive and demonstrative implementation of a Naive Bayes probabilistic classifier that can be applied to virtually any machine learning/classification/prediction application.
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adhesin prediction tools
Standalone version of adhesin prediction tools
This project provides users with standalone version of adhesin prediction tools- SPAAN: a software program for prediction of adhesins and adhesin-like proteins, MAAP: Malarial adhesin and adhesin-like proteins predictor and FungalRV adhesin predictor. The individual readme with each software contains the detailed instructions of software installation and usage procedures. These softwares are artificial intelligence based non-homology methods developed to aid identification of novel adhesins... -
Our intuitive email marketing software to help you save time and build lasting relationships with your subscribers.
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Soothsayer
Capacity exhaustion prediction from RRD files
Predict if storage utilised will reach capacity within defined period (maximum 5 years), using recent historical data contained within RRD files (maximum -1 year). Produces HTML (or partial HTML) and, more importanly, a PNG RRD Graph showing the prediction and, should the capacity be reached, an annotation indicating when. Optionally email out exception notices. -
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Activity Prediction Software
To envision the radiation exposure in Neutron Activation Experiments
A software called Activity Predictor is developed using Java TM programming language. The Activity Predictor calculates activities, exposure rates and gamma spectra of activated samples for NAA experiments. The calculation procedure for predictions involve both analytical and Monte Carlo methods. The Activity Predictor software is validated by a series of activation experiments. It has been found that this software calculates the activities and exposure rates precisely. The software also... -
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NextBus Public Feed Adapter for Java
A Java adapter for the NextBus Public XML Feed Service
Restful Web Service adapter for the NextBus prediction and transit network reporting service. This implementation uses XSD Schema, JAXB and a domain object model to decouple the consuming application from the over-the-wire representation of the data. NextBus is currently providing real-time bus data in several major metro transit agencies including, but not limited to MBTA (Boston), Toronto, Seattle, Brooklyn, Staten Island as well as a number of University towns. In additional... -
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This is a Draft project for implementation of Automate Tools for Mid-Sized Compagny for deployment and prototyping Standards and Regulation @work ! This will also lead to computability and prediction of effort Thru resolution of Human action @Work...
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CORNA is a package for R that analyses microarray data and miRNA target prediction data to find statistically over-represented miRNA-target relationships.
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miRPredict
microRNA prediction from next generation sequencing data
The project has been renamed to miR-PREFeR(microRNA PREdiction From small RNAseq data). The project is now hosted on github at https://github.com/hangelwen/miR-PREFeR . -
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QSAR Data Pretreatment
To remove the constant and highly correlated descriptors based on user
Before performing the actual chemometric analysis in QSAR, the raw data is usually pretreated due to following reasons: 1. To remove those descriptor whose values remains more or less constant for all compounds, since they only add computing time without contributing much to the results. 2. To reduce collinearity among the descriptors thereby preventing data over-fitting and aids in improving the prediction performance of the model. -
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We developed a universal approach and tool designated Geptop, based on orthology and phylogeny, to offer gene essentiality annotations. The web server and standalone version of Geptop are available at http://cefg.uestc.edu.cn/geptop/ free of charge. This package is dependent on Python, Biopython and BLAST+. Citation: Wei W, Ning L-W, Ye Y-N, Guo F-B (2013) Geptop: A Gene Essentiality Prediction Tool for Sequenced Bacterial Genomes Based on Orthology and Phylogeny. PLoS ONE 8(8): e72343. doi...
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Webapp
A web interface to the SnowyOwl gene prediction pipeline
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ViroSplice
A pipeline for splice site prediction in viruses
ViroSplice is used in Gatherer et al (2011) http://www.ncbi.nlm.nih.gov/pubmed/22109557 to exhaustively predict all the splice sites in human cytomegalovirus (HCMV). It is suitable for use in any genome of under 500kb. -
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BIRF
A Balanced Iterative Random Forest For Gene Selection From Microarray
A balanced iterative random forest algorithm is proposed to select the most relevant genes to the disease and can be used in the classification and prediction process. Balanced iterative random forest is an embedded feature selector that follows a backward elimination approach. The base learning algorithm is random forest which is involved in the process of determining which features are removed at each step. The algorithm starts with the entire set of features in the dataset. At every... -
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ChainKnot
ChainKnot is a non coding RNA pseudoknot prediction tool.
ChainKnot is a non coding RNA pseudoknot prediction tool. -
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GSP program are based on Bayesian framework with an EM algorithm to predict genome size iteratively, which is elegant in mathematics. The model first develop under the no sequencing error model, then extend to the sequencing errors containing model.
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easyPAC
easy Primer prediction from Alignments and Consensus sequences
Primer prediction from alignments and consensus sequences. easyPAC applies all standard quality tests to degenerate primer and primer pairs and optionally maps all primer candidates to an arbitrary number of reference files like repeat databases or genomes to ensure target specifity. -
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HPLC Retention Predictor
Performs accurate HPLC retention prediction
A Java applet that performs accurate HPLC retention prediction by back-calculating the gradient profile and flow rate actually produced by a user's instrument.