GSP program are based on Bayesian framework with an EM algorithm to predict genome size iteratively, which is elegant in mathematics. The model first develop under the no sequencing error model, then extend to the sequencing errors containing model.

Features

  • fast calculate the K-mer frequency of the genome size
  • the EM iterative algorithm for the genome size predition
  • extra error model for real data

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License

GNU General Public License version 3.0 (GPLv3)

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  • akka9981 Posted 2012-11-28
    rename the GSP project to the smartGS
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Additional Project Details

Operating Systems

BSD, Cygwin, IBM AIX, Linux

Languages

English

User Interface

Command-line

Programming Language

C

Registered

2009-12-14
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