MUMmer

MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.

Project Samples

ordered and oriented multiplot of finished vs. draft seqs

percent-identity color coded dotplot of a promer alignment

unordered multiplot of finished vs. draft sequence alignment

percent identity plot (bot) compared with gene models (top)

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License

Artistic License

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Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Advanced End Users, Science/Research

User Interface

Command-line

Programming Language

C, C++, Perl

Related Categories

Perl Bio-Informatics Software, C++ Bio-Informatics Software, C Bio-Informatics Software

Registered

2005-03-05

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