RADAR stands for Rapid Automatic Detection and Alignment of Repeats in protein sequences. RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats.
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AVANA - Antigen Variability ANAlyzer
The Antigen Variability ANAlyzer (AVANA) tool uses information entropy to measure variability in protein sequence alignments. It also compares alignments using mutual information, identifying the mutations that characterize specific sequence sets.
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XMapper
XMapper is a software tool used to map and score the cross-links in proteins and peptides by use of MassMatrix database search results. The results are displayed in color maps, called X-Maps, and also in .CSV files for further analysis.
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