[sbml-svn] SF.net SVN: sbml:[22267] trunk/specifications/sbml-level-3/version-2/core/ spec/annotations.tex

[<mh...@us...>]

Revision: 22267
          http://sourceforge.net/p/sbml/code/22267
Author:   mhucka
Date:     2015-05-16 03:47:20 +0000 (Sat, 16 May 2015)
Log Message:
-----------
Something about the page layout caused LaTeX to enter a loop.  Some
fiddling with page breaks seems to have fixed it.

Modified Paths:
--------------
    trunk/specifications/sbml-level-3/version-2/core/spec/annotations.tex

Modified: trunk/specifications/sbml-level-3/version-2/core/spec/annotations.tex
===================================================================
--- trunk/specifications/sbml-level-3/version-2/core/spec/annotations.tex	2015-05-15 19:57:14 UTC (rev 22266)
+++ trunk/specifications/sbml-level-3/version-2/core/spec/annotations.tex	2015-05-16 03:47:20 UTC (rev 22267)
@@ -139,7 +139,7 @@
 \newcommand{\nestedContentNS}  {\colorbox[gray]{.7}{\texttt{[NESTED CONTENT]}}}
 \newcommand{\nestedContent}    {\nestedContentNS\xspace}
 
-\vspace*{-0.5ex}
+\vspace*{-0.75ex}
 \begin{example}
 <\sbmlElement \otherContentTall metaid="\sbmlMetaNS" \otherContentTall>
   \otherContent
@@ -149,7 +149,7 @@
              \changed{xmlns:dcterms="http://purl.org/dc/terms/"}
              xmlns:vcard="http://www.w3.org/2001/vcard-rdf/3.0\#"
              xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"
-             xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >\vspace*{0.5ex}
+             xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >\vspace*{0.75ex}
       <rdf:Description rdf:about="#\sbmlMetaNS">
         \history
         <\relationElementNS>
@@ -168,7 +168,7 @@
   \otherContent
 </\sbmlElementNS>
 \end{example}
-\vspace*{-0.5ex}
+\vspace*{-0.75ex}
 
 The outline above shows the expected order of the elements.  The
 capitalized identifiers refer to generic strings of specific
@@ -187,7 +187,7 @@
 \begin{blockChanged}
 \nestedContent has the same format and restrictions as \relationElement:
 
-\vspace*{-0.5ex}
+\vspace*{-0.75ex}
 \begin{example}
   <\relationElementNS>
     <rdf:Bag>
@@ -197,7 +197,7 @@
     </rdf:Bag>
   </\relationElementNS>
 \end{example}
-\vspace*{-0.5ex}
+\vspace*{-0.75ex}
 
 
 \nestedContent is used to describe a clarification or another annotation about the \relationElement in which it appears, using such elements as \token{bqbiol:isDescribedBy}.  Nested content permits, for example, describing protein modifications on species, or adding evidence codes for an annotation.  Nested content relates to its containing \relationElement, not the other way around.  It qualifies, but does not change, its meaning.  Ignoring a \nestedContent does not affect the information provided by the containing \relationElement.  These elements may be nested arbitrarily deep, with each successive layer describing or clarifying the annotation it is embedded within.
@@ -283,7 +283,7 @@
 ``accession'' is perennial, and that is what should be used.
 
 SBML does not define how to interpret URIs.  There may be several
-ways of transforming a URI into a physical URL.  For example,
+ways of transforming a URI into a physical URL; e.g.,
 \changed{\uri{http://identifiers.org/go/GO:0007268}} can be translated into any
 of the following:
 \begin{itemize}\setlength{\parskip}{-0.7ex}
@@ -295,7 +295,7 @@
 \end{itemize}
 \vspace*{-1ex}
 
-Similarly, the URI \changed{\uri{http://identifiers.org/ec-code/3.5.4.4}} can refer to
+Similarly, \changed{\uri{http://identifiers.org/ec-code/3.5.4.4}} can refer to
 any of the following (among many):
 \begin{itemize}\setlength{\parskip}{-0.7ex}
 
@@ -468,6 +468,8 @@
 the prefix \token{bqbiol}).  The list will only grow; \ie no
 element will be removed from the list.
 
+\clearpage
+
 %===============================================================
 \subsection{History}
 \label{sec:model-history-annotation}