Activity for Jim Hu
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Jim Hu posted a comment on ticket #678
I apologize, but development on this project has been dormant for a while.
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Also change the child terms
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OTR: definition for GO:0034290 ! holin activity
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Pascale, you are correct that I would not. Just addressing Peter's comment above...
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My initial comment was made before my coffee had kicked in and I was thinking you...
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What level was discussed as "high level"?
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OTR: parentage of GO:1904091 ! peptidyl carrier protein activity involved in nonribosomal peptide biosynthesis
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NTR:nitrite reductase activity
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OTR:Should GO:0051338_!_regulation_of_transferase_activity be do not annotate?
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Hi David, Maddie is a CACAO student, in case you hadn't figured that out. We had...
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David, We've been asking CACAO students to use the tracker to give the term requests...
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There are multiple UniProt records for hok in different E. coli strains. So I think...
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OTR: scope of GO:0005215 ! transporter activity and its children
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OTR: GO:0097515 asexual spore wall definition
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OTR:scope of x formation terms
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New term requests: grouping terms under antibiotic
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Existing term-related request: arrangement of children of CHEBI:33281 antimicrobial agent?
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and within the etc I should have pointed out insects! Plants don't have limbs, but...
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and within the etc I should have pointed out insects!
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OTR:embryonic vs post-embryonic development
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Yes, Paola is correct and I should have been clearer in the report. It's a problem...
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PANTHER:PTN000120057
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I can ask my local telomere expert to weigh in if you like. Is it really single-strand...
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I would say phenotype. It's a consequence of the end replication problem; a limit...
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NTR:transcription pause site
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Fork reversal is not an abnormal phenotype. It's a normal process that responds to...
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aargh. Sourceforge did it again. My session must have timed out so I lost the really...
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I'll try to read some literature and also consult my bacterial surface experts.
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Yes
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OK except for - I'm not sure about "chromosome regions" insofar as people might think...
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Yes, the RNAPII part is too specific. Lac repressor does looping. So does bacteriophage...
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Binding vs formation is a slightly tough call. I originally suggested binding because...
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Hi David, I should have left a more informative original comment. Did you also look...
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Argh. Sourceforge ate my earlier version of a long reply. The current inconsistency...
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Yes, I agree on formation Also, yes on copy paste weirdness.
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Yes, copy paste weirdness.
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Happy to defer to those who actually know something!
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NTR:maintenance of retinal blood vessels
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thanks! Sent from my iPad On May 6, 2014, at 8:00 AM, "Paola Roncaglia" paolaroncaglia@users.sf.net...
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NTR:organomineral extracellular matrix
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You mean process term, right?
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NTR:xylanase activity
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I disagree, both with the scope of your definition, which is narrower than what is...
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NTR? Terms for protein glycosylation activities.
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Hi Diane, I was actually suggesting the other direction. The surface pellicle is...
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OTR:biofilm terms
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OTR:Synonyms for GO:0004512 ! inositol-3-phosphate synthase activity
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Doh! Should have looked at the parents. But do you agree that the differentia mean...
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Argh. Formatting seems to have gone all italics. Children of GO:0016337_!_cell-cell_adhesion...
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OTR: GO:0044650_!_adhesion_of_symbiont_to_host_cell
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NTR: dsDNA loop binding
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OTR:GO:0000404 ! loop DNA binding
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OTR: term name for GO:0017053 ! transcriptional repressor complex
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OTR+NTR: CRISPR biology and GO:0043571 ! maintenance of CRISPR repeat elements
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OTR: Parents of GO:0005802 ! trans-Golgi network
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OTR:GO:0043093 ! cytokinesis by binary fission
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ntr:modulation by virus of host cell division
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OTR: Parents of GO:0046725_!_negative_regulation_of_viral_protein_levels_in_host_cell
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NTR: C8-CoA:malonyl-ACP condensing activity
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Paola just posted a link to this ticket on this other one https://sourceforge.net/p/geneontology/ontology-requests/10634/...
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Paola just post a link to this ticket on this other one https://sourceforge.net/p/geneontology/ontology-requests/10634/...
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Thanks… not that the other ticked is about the process terms, while here we are looking...
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OTR: terms related to fatty acid sythesis
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Hi David, Sorry, I meant to send this along but got distracted. Jim From: Hays Rye...
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