NAMD

NAMD

Theoretical and Computational Biophysics Group
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About

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, it scales from desktop and laptop computers to high-end parallel platforms, hundreds of cores for typical simulations, and beyond 500,000 cores for the largest simulations. NAMD is built for researchers who need to simulate large molecular systems efficiently while preserving compatibility with widely used molecular modeling workflows. It uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, and it is file-compatible with AMBER, CHARMM, and X-PLOR. It is designed to support biomolecular simulations involving proteins, membranes, nucleic acids, solvents, ions, and other molecular systems where atomic interactions and time-dependent motion need to be studied in detail.

About

Nanome is a collaborative platform for molecular visualization and drug discovery. Teams load protein and small-molecule structures and review them together in 3D, in a web browser or in an XR headset (Meta Quest 3 and 3S, Apple Vision Pro, Samsung Galaxy XR). Everyone in a session sees the same structure at the same time, so a chemist in a headset and a colleague on a laptop can point at the same pocket from different cities. MARA, the AI copilot built into Nanome, runs docking, co-folding, electrostatics and ADMET estimates from plain-English requests, drawing on 300+ integrated scientific tools, and returns structures you can inspect in 3D. Nanome opens PDB, mmCIF, SDF, MOL2, PyMOL and Maestro files and connects to Schrodinger LiveDesign, OpenEye, Cresset Flare, CDD Vault, KNIME and Jupyter. Enterprise deployments run single-tenant or on-premises. Free web seat; 14-day full trial, no credit card.

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported

Platforms Supported

Windows Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported

Audience

Biophysicists, biologists, and simulation researchers requiring a biomolecular simulation tool for desktops, clusters, GPUs, and supercomputers

Audience

Medicinal chemists, computational chemists, structural biologists, and educators in pharma, biotech, and academia

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported

API

Offers API Not Supported

API

Offers API Not Supported

Screenshots and Videos

Screenshots and Videos

No images available

Pricing

Free
Free Version Supported
Free Trial Not Supported

Pricing

$20.83/month/user (academic)
Free Version Supported
Free Trial Supported

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported

Training

Documentation Supported
Webinars Supported
Live Online Supported
In Person Not Supported

Company Information

Theoretical and Computational Biophysics Group
Founded: 2006
United States
www.ks.uiuc.edu/Research//namd/

Company Information

Nanome
Founded: 2015
United States
nanome.ai

Alternatives

Alternatives

No Alternatives
Ascalaph Designer

Ascalaph Designer

Agile Molecule

Categories

Categories

Drug Discovery Supported
Molecular Modeling Supported

Integrations

No info available.

Integrations

No info available.
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