Cufflinks

Cufflinks

Cole Trapnell
SpliceCore

SpliceCore

Envisagenics
Cufflinks SpliceCore

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Cufflinks:

About

Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.
SpliceCore:

About

Using RNA sequencing (RNA-seq) data and Artificial Intelligence are both a necessity and an opportunity to develop therapeutics that target splicing errors. The use of machine learning enables us to discover new splicing errors and quickly design therapeutic compounds to correct them. SpliceCore is our dedicated AI platform for RNA therapeutics discovery. We developed this technology platform specifically for the analysis of RNA sequencing data. It can identify, test and validate hypothetical drug targets faster than traditional methods. At the heart of SpliceCore is our proprietary database of more than 5 million potential RNA splicing errors. It is the largest database of splicing errors in the world and it is used to test every RNA sequencing dataset that is input for analysis. Scalable cloud computing enables us to process massive amounts of RNA sequencing data efficiently, at higher speed and lower cost, exponentially accelerating therapeutic innovation.
Cufflinks:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
SpliceCore:

Platforms Supported

Windows Not Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
Cufflinks:

Audience

Scientists requiring a solution to analyze their RNA-Seq samples
SpliceCore:

Audience

Labs seeking an AI platform to generate a volume of insights comparable to years of traditional drug target discovery
Cufflinks:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
SpliceCore:

Support

Phone Support Supported
24/7 Live Support Not Supported
Online Supported
Cufflinks:

API

Offers API Not Supported
SpliceCore:

API

Offers API Not Supported
Cufflinks:

Screenshots and Videos

SpliceCore:

Screenshots and Videos

Cufflinks:

Pricing

Free
Free Version Supported
Free Trial Not Supported
SpliceCore:

Pricing

No information available.
Free Version Not Supported
Free Trial Not Supported
Cufflinks:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Review this Software
SpliceCore:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
Cufflinks:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
SpliceCore:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Supported
Cufflinks:

Company Information

Cole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/
SpliceCore:

Company Information

Envisagenics
Founded: 2014
United States
www.envisagenics.com/platform/
Cufflinks:

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SpliceCore:

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Cufflinks:

Categories

SpliceCore:

Categories

Drug Discovery Supported
Healthcare AI Supported
Cufflinks:

Integrations

No info available.
SpliceCore:

Integrations

No info available.
Cufflinks:
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SpliceCore:
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