Cufflinks

Cufflinks

Cole Trapnell
BioTuring Browser Cufflinks

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BioTuring Browser:

About

Explore hundreds of curated single-cell transcriptome datasets, along with your own data, through interactive visualizations and analytics. The software also supports multimodal omics, CITE-seq, TCR-seq, and spatial transcriptomic. Interactively explore the world's largest single-cell expression database. Access and query insights from a single-cell database of millions of cells, fully annotated with cell type labels and experimental metadata. Not just creating a gateway to published works, BioTuring Browser is an end-to-end solution for your own single-cell data. Import your fastq files, count matrices, Seurat, or Scanpy objects, and reveal the biological stories inside them. Get a rich package of visualizations and analyses in an intuitive interface, making insight mining from any curated or in-house single-cell dataset become such a breeze. Import single-cell CRISPR screening or Perturb-seq data, and query guide RNA sequences.
Cufflinks:

About

Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.
BioTuring Browser:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
Cufflinks:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
BioTuring Browser:

Audience

Scientists in search of a solution to perform single-cell transcription analysis
Cufflinks:

Audience

Scientists requiring a solution to analyze their RNA-Seq samples
BioTuring Browser:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
Cufflinks:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
BioTuring Browser:

API

Offers API Supported
Cufflinks:

API

Offers API Not Supported
BioTuring Browser:

Screenshots and Videos

Cufflinks:

Screenshots and Videos

BioTuring Browser:

Pricing

Free
Free Version Supported
Free Trial Not Supported
Cufflinks:

Pricing

Free
Free Version Supported
Free Trial Not Supported
BioTuring Browser:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
Cufflinks:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
BioTuring Browser:

Training

Documentation Supported
Webinars Supported
Live Online Not Supported
In Person Not Supported
Cufflinks:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
BioTuring Browser:

Company Information

BioTuring Browser
United States
bioturing.com/bbrowser
Cufflinks:

Company Information

Cole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/
BioTuring Browser:

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Cufflinks:
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Platforma

Platforma

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BioTuring Browser:

Categories

Cufflinks:

Categories

BioTuring Browser:

Integrations

Python Supported
R Supported
Cufflinks:

Integrations

Python Not Supported
R Not Supported
BioTuring Browser:
Claim BioTuring Browser and update features and information
Claim BioTuring Browser and update features and information
Cufflinks:
Claim Cufflinks and update features and information
Claim Cufflinks and update features and information