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ViralNet is an open-source software package for inferring the Clonal Structure of Viral Populations from
Time Series Sequencing. The program aims to characterize and quantify the composition, the abundance and
the evolutionary history of the underlying viral population within a given host by analyzing Next Generation
Sequencing data.
ViralNet takes as input the collection of reads (or several collections of reads in case of many data
samples or daily data) and the reference genome and it constructs the evolutionary network exhibiting the
species abundance profile and the list of haplotypes along with their prevalence.

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2014-08-22

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