PoPoolation TE2

Brought to you by: rokofler

Downloads: 3 This Week

Last Update: 2016-09-15

Get an email when there's a new version of PoPoolation TE2

PoPoolationTE2: enables comparative population genomics of transposable elements (TE). As a major innovation PoPoolation TE2 introduces the physical pileup file which allows to homogenize the power to identify TEs and thus enables an unbiased comparison of TE abundance between samples, where samples could be pooled populations, tissues or sequenced individuals.

Project Samples

Project Activity

See All Activity >

Follow PoPoolation TE2

PoPoolation TE2 Web Site

Other Useful Business Software

Demo Series - Small Business Backup By Veeam Icon

Demo Series - Small Business Backup By Veeam

Learn how to protect your Microsoft 365 data, with simple, actionable tips today.

Watch this on-demand demo series and learn how to protect your Microsoft 365 data with clear, simple, actionable steps that are easy to implement for businesses of all sizes.

Watch Demo Series

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of PoPoolation TE2!

Additional Project Details

Registered

2015-08-17

Report inappropriate content

Ship Agents Faster

Transform your applications and workflows into powerful agentic systems at global scale.

Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.

Start Free

Recommended Projects

popoolationte
PoPoolation TE is a quick and simple pipeline for the analysis of transposable element insertions in (natural) populations using next generation sequencing. PoPoolation TE calculates TE insertion frequencies for TEs that are present in the reference genome as well as for novel TE insertions. PoPoolation TE requires paired-end reads from a pooled population, a reference sequence and transposable element sequences . Documentation: https://sourceforge.net/p/popoolationte/wiki/Main/
popoolation2
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences. PoPoolation2 requires next generation sequencing data of pooled genomic DNA (Pool-Seq). It may be used for measuring differentiation between populations, for genome wide association studies and for experimental evolution. Documentation: https://sourceforge.net/p/popoolation2/wiki/Main/
virHap
A Software package for Inferring the haplotype structure of a mixed vi
REPCLASS
First automated tool for classification of transposable elements in eukaryotic organisms.
popoolation
estimate natural variation and positive selection