popoolation

estimate natural variation and positive selection

Brought to you by: rokofler

Downloads: 5 This Week

Last Update: 2024-06-11

Get an email when there's a new version of popoolation

PoPoolation is a pipeline for analysing pooled next generation sequencing data. Currently PoPoolation allows to calculate Tajima’s Pi, Watterson’s Theta and Tajima’s D with a sliding window approach for chromosomes or for set of genes. One of the main challenges in population genomics is to identify regions of intererest on a genome wide scale. We believe that PoPoolation will greatly aid this task by allowing a fast and user friendly analysis of NGS data from DNA pools.

Documentation: https://sourceforge.net/p/popoolation/wiki/Main/

Project Samples

popoolation Screenshot 1

Project Activity

See All Activity >

Follow popoolation

popoolation Web Site

Other Useful Business Software

Secure File Transfer for Windows with Cerberus by Redwood Icon

Secure File Transfer for Windows with Cerberus by Redwood

Protect and share files over FTP/S, SFTP, HTTPS and SCP with the #1 rated Windows file transfer server.

Cerberus supports unlimited users and connections on a single IP, with built-in encryption, 2FA, and a browser-based web client — all deployable in under 15 minutes with a 25-day free trial.

Try for Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of popoolation!

Additional Project Details

Registered

2015-03-16

Report inappropriate content

$300 Free Credits for Your Google Cloud Projects

Start building on Google Cloud with $300 in free credits. No commitment, no credit card required until you're ready to scale.

Launch your next project with $300 in free Google Cloud credits—no strings attached. Test, build, and deploy without risk. Use your credits across the entire Google Cloud platform to find what works best for your needs. After your credits are used, continue with always-free tier services. Only pay when you're ready to scale. Sign up in minutes and start exploring.

Start Free Trial

Recommended Projects

Domigene Genetic Algorithm
Domigene is a genetic algorithm API attempting to incorporate dominant and recessive genes. Supports modular evolution types, genetic programs, definable instruction sets, variation in population, chromosomes, mortality, mutation, fitness functions.
DMEAS
DNA Methylation Entropy Analysis Software
LDx
LDx uses approximate ML to estimate linkage from pooled NGS data
popoolation2
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences. PoPoolation2 requires next generation sequencing data of pooled genomic DNA (Pool-Seq). It may be used for measuring differentiation between populations, for genome wide association studies and for experimental evolution. Documentation: https://sourceforge.net/p/popoolation2/wiki/Main/
popoolationte
PoPoolation TE is a quick and simple pipeline for the analysis of transposable element insertions in (natural) populations using next generation sequencing. PoPoolation TE calculates TE insertion frequencies for TEs that are present in the reference genome as well as for novel TE insertions. PoPoolation TE requires paired-end reads from a pooled population, a reference sequence and transposable element sequences . Documentation: https://sourceforge.net/p/popoolationte/wiki/Main/