PoPoolation TE2 Files

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Name	Modified	Size	InfoDownloads / Week
previous-releases	2016-05-20		0
te-benchmark	2016-04-28		6
publicationrelated	2016-04-26		0
driver-scripts	2016-04-26		0
popte2-v1.10.03.jar	2016-05-20	3.6 MB	5
create-reads-for-te-sequences.py	2016-01-26	3.1 kB	0
walkthrough-refgenome.zip	2015-12-23	35.9 MB	2
walkthrough-reads.zip	2015-12-23	295.8 MB	1
rawdata_preparatory.zip	2015-11-18	318.8 kB	0
Totals: 9 Items		335.6 MB	14

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SimulaTE allows to simulate arbitrary complex landscapes of transposable elements (TEs). Additionally reads may be simulated using the genomes of all indivdiuals in the population as template. Reads may be simulated using different sequencing technologies (PacBio, Illumina paired-ends) and strategies (sequencing individuals and pooled populations). SimulaTE will greatly aid in evaluating the suitability of different approaches for estimating TE abundance within populations and to test whether given genomic resources, such as a reference genome or a TE database (a fasta file containing consensus sequences of TEs), are suitable for TE identification. Manual https://sourceforge.net/p/simulates/wiki/Home/#manual Walkthrough https://sourceforge.net/p/simulates/wiki/Home/#walkthrough Validation https://sourceforge.net/p/simulates/wiki/Home/#validation
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