The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program.

Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in the following paper: Yang Liao, Gordon K Smyth and Wei Shi. "The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote", Nucleic Acids Research, 2013, 41(10):e108

Features

  • read aligner
  • next-generation sequencing

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow Subread

Subread Web Site

Other Useful Business Software
Keep company data safe with Chrome Enterprise Icon
Keep company data safe with Chrome Enterprise

Protect your business with AI policies and data loss prevention in the browser

Make AI work your way with Chrome Enterprise. Block unapproved sites and set custom data controls that align with your company's policies.
Download Chrome
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of Subread!

Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

C

Related Categories

C Molecular Science Software, C Bio-Informatics Software

Registered

2011-01-20