A program for visualising Affymetrix SNP array data for identification regions of homozygosity. Written to aid autozygosity mapping and aid the discovery of potential disease loci.

Features

  • Analyses birdseed files generated by Affymetrix Genotyping Console
  • Simple, intuitive interface
  • Easily identify shared regions of homozygosity
  • Automatically identifies concordant or non-concordant shared regions
  • Browse by chromosome
  • Zoom views
  • Select and save regions
  • Output regions to formatted .xlsx files
  • Save and share projects

Project Samples

Easily identify shared homozygous regions Identify non-concordant shared regions Select and examine regions Customize colours schemes to your liking Write regions to Excel including easy to read formatting Let Snp Viewer find and report homozygous regions

Project Activity

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Categories

Bio-Informatics, Data Visualization

License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Intended Audience

Developers, End Users/Desktop

Registered

2013-06-12
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