kSNP4 does SNP discovery and SNP annotation from whole genomes
Neutrality tests using the SNP site frequency spectrum
Aautomatically downloads snapshots from the Behringer XR18
script for somatic SNP and Indel calling
Phasing-based somatic deletion caller from single-cell WGS data
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
Multivariate traits genome-wide association analysis and decomposition
RNASeqBrowser: A genome browser for strand specific RNAseq reads
A Snakemake-based handy parameter-free pipeline for RNA-Seq analysis
Binary files for variantkey
SNP calling, annotation and gene/transcripts expression quantification
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
REHUNT (Restriction Enzymes HUNTing)
Viral Quasispecies Reconstruction software based on QSdpR algorithm
Tests for enrichment of GWAS SNPs in epigenetic datasets
Exhaustive search for third order epistatic interactions using CUDA