Download
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data. PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generate a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+. PycoQC is written in pure Python3. Python 2 is not supported.
Features
- PycoQC computes metrics and generates interactive QC plots
- Documentation available
- Example HTML reports
- Example JSON reports
- The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices
- Documentation available
Project Samples
Categories
Data VisualizationLicense
GNU General Public License version 3.0 (GPLv3)Follow pycoQC
Other Useful Business Software
Ship Agents Faster
Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of pycoQC!