123VCF has been developed to make the filtration step of VCF files efficient and more importantly easy to understand.
It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings.

User manual:
https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf

If you use 123VCF, please cite its paper:
Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC Bioinformatics 25, 68 (2024). https://doi.org/10.1186/s12859-024-05661-5

_____________________________________
Authors: Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini
Supervisors: Javad Zahiri, PhD - Masoud Garshasbi, PhD

Department of Neuroscience, University of California San Diego, California, USA
Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran

Features

  • Graphical user interface
  • Easy-to-use
  • Easy-to-understand
  • Compressed or non-compressed VCF files as input
  • Passed variants present in VCF format, and Tab-separated format
  • 123VCF puts the same BED feature variants next to each other in a TSV file when the user defines a BED filter to detect possible compound heterozygous variants
  • CLI added to be more reproducible

Project Samples

Project Activity

See All Activity >

Categories

Data Analytics

License

MIT License

Follow 123VCF

123VCF Web Site

Other Useful Business Software
Our Free Plans just got better! | Auth0 Icon
Our Free Plans just got better! | Auth0

With up to 25k MAUs and unlimited Okta connections, our Free Plan lets you focus on what you do best—building great apps.

You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
Try free now
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of 123VCF!

Additional Project Details

Operating Systems

Linux, Mac, Windows

Intended Audience

Education, Advanced End Users, End Users/Desktop, Testers

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Data Analytics Tool

Registered

2022-09-20