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mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.

mzmatch Web Site


  • Mass Spectrometry data analysis
  • Metabolomics
  • PeakML intermediate data file format
  • XCMS integration
  • 1-to-1 mapping to Thermo RAW file access
  • 1-to-1 mapping to Waters RAW file access
  • PeakML Viewer
  • Thermo LogViewer


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Additional Project Details

Intended Audience

Developers, Science/Research

Programming Language

C, Java, S/R



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