MuffinEC

MuffinEC is an error correction software capable of handling all types of errors (insertion deletions, mismatches and unknown bases). It officially supports four technologies (Illumina, 454, ion Torrent and PacBio - experimental) and it also has a generic setup for others (old and/or new). It is released under LGPL version 3.0. MuffinEC can use multicore systems, thanks to its OpenMP implementation.

We are developing the 2nd version of MuffinEC. The beta version is already available online. The changes are listed in the VERSION_HISTORY file. Please report any problem you may encounter at the email address specified in the README file. We really appreciate your help.

Features

Handles insertions, deletions, mismatches, unknown bases
Supports Illumina, 454, Ion Torrent and PacBio (experimental)
Generic param for other technologies
MultiThreaded
Low memory consumption

Project Activity

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License

GNU Library or Lesser General Public License version 3.0 (LGPLv3)

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Additional Project Details

Intended Audience

Advanced End Users, Developers, End Users/Desktop, Healthcare Industry, Information Technology, Science/Research

User Interface

Command-line

Programming Language

C++

Related Categories

C++ Bio-Informatics Software

Registered

2014-07-09

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