mirplant

please cite:
An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275.

We will create index for you if you tell us your interested plants (j.an@qut.edu.au).

Features

java source code "miRPlant.zip" can be found clicking "Browse All Files" on the right corner of this windows. Netbeans IDE was used
speeded up in v4, the command line version can be found by clicking "Browse All Files"
bug fixed. in v2, the read count was incorrect in xxxx.known_miR.result file, when the inputted bam file was generated in BWA etc.
bug fixed. in v1, exception appeared when clicking "save image" in the popup window In Mac.

Project Samples

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow mirplant

mirplant Web Site

Other Useful Business Software

Gen AI apps are built with MongoDB Atlas

Build gen AI apps with an all-in-one modern database: MongoDB Atlas

MongoDB Atlas provides built-in vector search and a flexible document model so developers can build, scale, and run gen AI apps without stitching together multiple databases. From LLM integration to semantic search, Atlas simplifies your AI architecture—and it’s free to get started.

Start Free

Rate This Project

User Reviews

Be the first to post a review of mirplant!

Additional Project Details

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2014-01-06

Similar Business Software

QIAGEN CLC Genomics Workbench

QIAGEN CLC Genomics Workbench is a powerful solution that works for everyone, no matter the workflow. Cutting-edge technology and unique features and algorithms widely used by scientific leaders in industry and academia make it easy to overcome challenges associated with data analysis....

See Software
GenomeStudio

Visualize and analyze data generated on Illumina array platforms with GenomeStudio Software. This powerful solution supports the genotyping analysis of microarray data. Performance-optimized tools and a user-friendly graphical interface enable you to convert data into meaningful results quickly...

See Software
Cellenics

Turn your single-cell RNA sequencing data into meaningful insight with Cellenics software. Biomage hosts a community instance of Cellenics, an open source analytics tool for single-cell RNA sequencing data that has been developed at Harvard Medical School. It enables biologists to explore...

See Software
LatchBio

Stop wresting with cloud infrastructure and broken informatics tools. Start discovering biological insights today. Scientific discovery is bottlenecked by the fragmentation of tooling across biology and bioinformatics teams. We built a harmonized bioinformatics platform between wet lab and dry...

See Software
Qlucore Omics Explorer

Qlucore Omics Explorer is so easy to use that you no longer have to depend on an expert in bioinformatics to explore and analyze your Omics and NGS data sets. Qlucore Omics Explorer is a D.I.Y next-generation bioinformatics software for research in life science, plant- and biotech industries, as...

See Software
Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software