Browse Code
lobSTR is a tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data.
Features
- (v2.0.0) Support for paired end reads. lobSTR uses mate pair information to increase confidence in STR alignments. lobSTR can still run in single-end mode.nment quality and produces accurate CIGAR scores that can be used for downstream SNP calling and viewing on samtools tview.
- (v2.0.0) Paired-end read stitching: when possible, lobSTR will stitch overlapping paired-end reads that in some cases can span longer STRs than possible with a single read.
- (v2.0.0) Support for reading gzipped FASTA and FASTQ files.
- (v.2.0.0) Alignment of partially spanning reads: lobSTR reports alignments of reads that only partially span STR regions. The allele length reported gives a lower bound on the true STR allele.
- (v2.0.0) Conversion of allelotype output to VCF format
Follow lobSTR
Other Useful Business Software
Go from Code to Production URL in Seconds
Skip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
Rate This Project
Login To Rate This Project
User Reviews
-
Great stuff.
