CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome views of data but can be used to create images of single chromosomes/linkage groups, contigs, or BACs, or even proteins -- any feature that has a location on a backbone. Handles most standard genetic/genomic coordinate systems. Reads GFF3 data and produces a PNG or SVG image.

Project Samples

Gene models for maize genome assembly B73 RefGen_v2 BACs, hit densities, CGH, cytogenetic markers

Project Activity

See All Activity >

Categories

Bio-Informatics, Data Visualization

Follow CViT

CViT Web Site

Other Useful Business Software
99.99% Uptime for MySQL and PostgreSQL Databases Icon
99.99% Uptime for MySQL and PostgreSQL Databases

Sub-second maintenance. 2x read/write performance. Built-in vector search for AI apps.

Cloud SQL Enterprise Plus delivers near-zero downtime with 35 days of point-in-time recovery. Supports MySQL, PostgreSQL, and SQL Server.
Try Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of CViT!

Additional Project Details

Intended Audience

Developers, Science/Research

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software, Perl Data Visualization Software

Registered

2010-10-20
Report inappropriate content