Open Source Perl Data Visualization Software

The ggplot2-book repository contains the source for ggplot2: Elegant Graphics for Data Analysis, written by Hadley Wickham. The book explains the theory and application of the ggplot2 package in R for data visualization, guiding readers through its layered grammar of graphics approach. It serves as both a practical guide and conceptual reference for building advanced plots and mastering ggplot2.

NOTE: Code commits were FROZEN on SourceForge in July of 2016, and the project no longer uses sourceforge. All new code is now at <http://github.com/Xastir/Xastir>. The version you can download here has been obsolete for over 10 years, and other than by deleting the project entirely we can't disable the "Download Now" button. Don't download from here. Go to github. Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported. Linux/FreeBSD/Solaris/MacOSX/Windows in any of 7 languages. Can also be used for mobile mapping w/GPS. MAILING LISTS ARE AT: PROJECT->WEB SITE.

xoscope is a digital oscilloscope using input from a sound card or EsounD and/or a ProbeScope/osziFOX and will soon support Bitscope hardware. Includes 8 signal displays, variable time scale, math, memory, measurements, and file save/load.

Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.

Flame graphs are a visualization of profiled software, allowing the most frequent code-paths to be identified quickly and accurately. They can be generated using my open source programs, which create interactive SVGs. See the Updates section for other implementations. Recently I've been helping with d3-flame-graph. The x-axis shows the stack profile population, sorted alphabetically (it is not the passage of time), and the y-axis shows stack depth, counting from zero at the bottom. Each rectangle represents a stack frame. The wider a frame is is, the more often it was present in the stacks. The top edge shows what is on-CPU, and beneath it is its ancestry. The colors are usually not significant, picked randomly to differentiate frames. Flame charts were first added by Google Chrome's WebKit Web Inspector (bug). While inspired by flame graphs, flame charts put the passage of time on the x-axis instead of the alphabet.

The PDL module gives standard perl the ability to COMPACTLY store and SPEEDILY manipulate the large N-dimensional data sets that are the bread and butter of scientific computing.

OmniGene is a set of reausable components that have been packaged into frameworks. These frameworks are used to produce domain specific services for common bioinformatics tasks including: visualization, database access, and pipeline building.

AquaTerm is a Mac OS X grahics renderer. It allows command line applications written in ObjC, C, FORTRAN, Lisp, Perl or Python to display vector graphics, text and images using a simple API. Adapters for gnuplot, PGPLOT, and PLplot exists as well.

GEOSS: Gene Expression Open Source System (used to be called Genex Va) GEOSS is a secure, multiuser, gene expression database and analysis package. GEOSS is distinguished by a well developed web based user interface, and analysis/reporting.

ProcessViewBrowser & ProcessViewServer represent an OpenSource attempt to industrial process visualization. It is based on Qt and is very portable. (Now also available as commercial software)

Microcontroller (AVR) based standalone digital light controllers ("dimmers"). The "Diamond" series supports 20 channels (TRIAC, FET, 0-10V, relay) with automatic fading, 20 scenes, 21 timers, IR remote, LCD, DMX-512 interface, global standby & more.

A generic geospatial analysis and viewing capability using Perl scripts that provides the foundation and structure for readily creating KML data files from disparate data sources. KML files can be read and viewed by Google Earth and other tools.

g2 is an easy to use, portable and powerful 2D graphics library. It provides a comprehensive set of functions for simultaneous generation of graphical output on different types of devices.

As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http://sourceforge.net/p/adamajava/wiki/Home/

Krona allows hierarchical data to be explored with zoomable HTML5 pie charts. Krona charts can be created using an Excel template or Krona Tools, which includes support for several bioinformatics tools and raw data formats.

VisIt is an interactive parallel visualization and graphical analysis tool for viewing scientific data.

TraffStats: network Traffic Statistic - is a monitoring and traffic analysis software, using SNMP to collect data from any enabled device. - has the ability to generate graphs (using jpgraph) with the option to compare and sum up different devices.

VisualNMS is a network management system with powerful visualisation features due to its vectorial based rendering (SVG). It is built using perl, javascript, SVG, HTML. It includes Layer 2 autodiscovery based on LLDP and other discovery protocols (Cisco's CDP, Extreme Networks' EDP, etc.). Other features include: real time SVG graphs on links, web2cli engine (AJAX to Telnet/CLI), editable maps, auto layout (based esentially on GraphViz), VLAN mapping (work in progress) based on SNMP.

A perl script to download and archive webcam images in jpg format. The script will determine how often the image is updated and will download images to a series of sequentially numbered files.

Simulates and visualizes swarming algorithms with limited communication. Also provides an interface to animate particle motion by playback (with pause, fastforward, and rewind) of path information from files. Can output EPS figures and avi frames.

The ADQ project aims to provide device drivers and a terminal based data acquisition and control program for the Meilhaus ME26 data acquisition board and the Meilhaus ME53 relay boards. The data can also be displayed in real time with a Web page.

This project aims at displaying and analysing data recorded by Arexx temperature loggers on Unix operating systems. Although the code is currently implemented for etching data from Arexx loggers, the UI itself is completely independent and can be reused with other temperature databases.

Beam and it's follow-on I-Beam are sets of programs to produce coverage charts of radio sources. It has been used for RADAR, DME, VOR and various communications sources specific to aviation. However, it is also valid for cell phone, TV and radio towers

Visualize your bioinformatics analysis process.

BioGraphNet is a 'sandbox' within BioMOBY, comprising a common standard and collection of services for sharing distributed protein-interaction network information. We now serve several network data types, and encourage others to participate.