CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome views of data but can be used to create images of single chromosomes/linkage groups, contigs, or BACs, or even proteins -- any feature that has a location on a backbone. Handles most standard genetic/genomic coordinate systems. Reads GFF3 data and produces a PNG or SVG image.

Project Samples

Gene models for maize genome assembly B73 RefGen_v2 BACs, hit densities, CGH, cytogenetic markers

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Categories

Bio-Informatics, Data Visualization

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Additional Project Details

Intended Audience

Developers, Science/Research

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software, Perl Data Visualization Software

Registered

2010-10-20
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