Multi-functional batch sequence aligner incorporating Needleman-Wunsch, Smith-Waterman and Oommen-Kashyap algorithms along with compound alignment of secondary sequences.

Features

  • Global sequence alignment using Needleman-Wunsch algorithm
  • Local sequence alignment using Smith-Waterman algorithm
  • Transition probability computation using Oommen-Kashyap algorithm
  • Compound alignment of sequence pairs
  • Batch processing

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Eiffel

Related Categories

Eiffel Bio-Informatics Software

Registered

2008-04-09
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