VIGOR is a tool for annotating coding genes in viral genomes. It was developed by Jeffrey Hoover and Shiliang Wang for The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID).

http://www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf

contact:
Jeff Hoover
301-540-7858
jefhv@aol.com

Features

  • understands RNA editing, ribosomal slippage, stop codon read-thru & alternate start codons
  • annotates mature peptides on polyproteins
  • handles spliced, overlapping, and embedded genes
  • handles circular, partial, and draft (gapped) genomes
  • diagnoses frameshifts in assembly
  • includes reference datasets for more than 50 species
  • includes tools for creating new reference datasets

Project Samples

VIGOR3 Screenshot 1 Flowchart 1 - find candidates Flowchart 2 - process candidates Flowchart 3 - find gene Flowchart 4 - generate reports VIGOR genome summary

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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VIGOR3 Web Site

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Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Perl

Database Environment

SQLite

Related Categories

Perl Bio-Informatics Software

Registered

2014-04-18
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