TASSEL Bugs

TASSEL is a bioinformatics software package

Brought to you by: buckler4, tcasstevens

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175	SNPs being called at reference "N" sites in TASSEL 4, reported reference allele is "A".	v1.0_(example)	open		2014-05-23	2014-05-23	3
174	MergeIdenticalTaxaPlugin in TASSEL 4.0	v1.0_(example)	open		2014-03-19	2014-10-01	5
169	TASSEL 4 VCF Manipulation	v1.0_(example)	open	Qi Sun	2013-07-17	2013-07-25	5
162	TASSEL discards hapmap file metadata	v1.0_(example)	open	Terry Casstevens	2013-05-28	2013-06-11	5
160	ExtractHapmapSubsetPlugin does not exit when no taxa match hapmap.		open	Peter Bradbury	2013-01-22	2013-01-23	5
159	UNEAK Pipeline:ArrayIndexOutOfBoundsException		open	Fei Lu	2013-01-10	2013-01-11	4
158	ArrayIndexOutOfBoundsException while running UNEAK pipeline	None	open	Fei Lu	2012-12-18	2012-12-18	5
157	Importing with <Use> and <Format>	None	open	Terry Casstevens	2012-12-07	2013-01-03	5
154	TagCountToFastqPlugin vs. MergeMultipleTagCountPlugin differ	None	open	Jeff Glaubitz	2012-08-31	2013-01-03	5
151	genetic distance calculated wrong for hapmap data	None	open	Peter Bradbury	2012-08-16	2012-08-16	5
150	Manhattan plot miscolored/misplaced SNPs	None	open	Jon Zhang	2012-06-12	2012-06-25	5
148	Overall genosummary hets	None	open	Terry Casstevens	2012-05-11	2012-06-25	5
147	Tutorial fails in TASSEL 4	None	open	Terry Casstevens	2012-04-30	2012-06-25	5
146	SBitNucleotide.isIndel()	None	open	Ed Buckler	2012-04-10	2013-01-03	5
142	Chr and position filter does not work together	None	open	Terry Casstevens	2011-11-28	2011-12-07	5
141	Output LD sliding window	None	open	Terry Casstevens	2011-10-31	2011-11-09	5
140	MergeMultipleTagCountPlugin java.io.EOFException	None	open	Terry Casstevens	2011-10-15	2012-08-29	5
139	GBS pipeline - FastqToTBTPlugin	None	open	Terry Casstevens	2011-09-29	2012-08-29	5
138	GBS pipeline - FastqToTagCountPlugin	None	open	Terry Casstevens	2011-09-29	2012-08-29	5
135	Number of Permutations (LD)	None	open	Ed Buckler	2011-09-14	2013-01-03	5
132	Synonimizer not working correctly	None	open	Terry Casstevens	2011-06-27	2011-06-29	5
131	Load plink format file does not work	None	open	Terry Casstevens	2011-06-03	2011-06-04	5
127	compression	None	open	Zhiwu Zhang	2011-02-26	2011-04-21	5
123	GLM: A lot of low P Values	None	open	Peter Bradbury	2011-01-26	2013-01-03	5
115	Filter sites remove +/- SNPs	None	open	Jon Zhang	2010-11-01	2010-11-02	5

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