Hello,
I have a persistent failure to merge tag counts in the UNEAK pipeline. The log immediately prior to ceasing execution reads:
Reading Haplotypes distribution from:/home/mgttri/gbswork/UNEAK/tagCounts/BBGF23x003_C0TAEACXX_1_DNA120430P01_C01_X5.cnt
Number of Tags in file:957635
Reading Haplotypes distribution from:/home/mgttri/gbswork/UNEAK/tagCounts/BBGF23x017_C0TAEACXX_1_DNA120430P01_A03_X5.cnt
Number of Tags in file:2294343
Position index sort begin.
Position index sort end.
Position index sort begin.
Position index sort end.
Rows collapsed:298270
Unique tags retained:58572717
Then log reads:
Exception in thread "Thread-0" java.lang.ArrayIndexOutOfBoundsException: 60000000
at net.maizegenetics.gbs.tagdist.TagCountMutable.addReadCounts(TagCountMutable.java:61)
at net.maizegenetics.gbs.pipeline.UMergeTaxaTagCountPlugin.mergeAllTagCount(UMergeTaxaTagCountPlugin.java:153)
at net.maizegenetics.gbs.pipeline.UMergeTaxaTagCountPlugin.performFunction(UMergeTaxaTagCountPlugin.java:62)
at net.maizegenetics.plugindef.AbstractPlugin.dataSetReturned(AbstractPlugin.java:201)
at net.maizegenetics.plugindef.ThreadedPluginListener.run(ThreadedPluginListener.java:29)
Thank you.
