Re: [sbml-dynamic] SBML Dynamic Structures at Combine

[Chris J. M. <my...@ec...>]

We developed a dynamic simulator using SBML annotations that is described here:

http://pubs.acs.org/doi/abs/10.1021/sb300082b <http://pubs.acs.org/doi/abs/10.1021/sb300082b>

Some of the ideas from this experience influenced the current SBML dynamic draft package.   This package also has JSBML support, and I think perhaps libSBML support.  The key thing is it piggybacks off the Cell Behavior Ontology (CBO) which is the current effort in this domain with the most support.  

A lot of interesting feedback came in today’s discussion.  It will be an interesting session on Friday I’m sure.  Thanks for your help leading it.

Cheers,

Chris

> On Oct 13, 2015, at 3:12 PM, Ally Hume <a....@ed...> wrote:
> 
> Hi,
> 
> Chris Myers has asked me to lead the Friday afternoon session on Dynamic Structures at Combine.
> 
> I'm keen to discuss the suitability of the package for the dynamic creation of new sub-models as perviously discussed on this forum but I don't want to hijack the whole session for this purpose.
> 
> If anybody else has other topics they would like to discuss please me know so I can ensure we fit them in.  I would be interested to know more about the current status, any draft implementations, the main driving use cases etc.
> 
> Please just email me or catch we at one of the breaks.
> 
> Regards,
> 
> Ally
> 
> 
> Ally Hume
> Researcher, SynthSys, The University of Edinburgh
> Software and Data Architect, EPCC, The University of Edinburgh
> 
> 
> 
> 
> -- 
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> Scotland, with registration number SC005336.
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