[sbml-svn] SF.net SVN: sbml:[21772] trunk/specifications/sbml-level-3/version-1/fbc/ spec

[<fbe...@us...>]

Revision: 21772
          http://sourceforge.net/p/sbml/code/21772
Author:   fbergmann
Date:     2014-11-28 07:25:45 +0000 (Fri, 28 Nov 2014)
Log Message:
-----------
- minor changes (pageflow, coloring, typo)

Modified Paths:
--------------
    trunk/specifications/sbml-level-3/version-1/fbc/spec/background.tex
    trunk/specifications/sbml-level-3/version-1/fbc/spec/best-practices.tex
    trunk/specifications/sbml-level-3/version-1/fbc/spec/main.pdf
    trunk/specifications/sbml-level-3/version-1/fbc/spec/main.tex
    trunk/specifications/sbml-level-3/version-1/fbc/spec/syntax.tex
    trunk/specifications/sbml-level-3/version-1/fbc/spec/syntax_gene_association.tex

Added Paths:
-----------
    trunk/specifications/sbml-level-3/version-1/fbc/spec/sbml-fbc-version-2-rc-20141128.pdf

Removed Paths:
-------------
    trunk/specifications/sbml-level-3/version-1/fbc/spec/sbml-fbc-version-2-rc-20141127.pdf

Modified: trunk/specifications/sbml-level-3/version-1/fbc/spec/background.tex
===================================================================
--- trunk/specifications/sbml-level-3/version-1/fbc/spec/background.tex	2014-11-27 20:44:43 UTC (rev 21771)
+++ trunk/specifications/sbml-level-3/version-1/fbc/spec/background.tex	2014-11-28 07:25:45 UTC (rev 21772)
@@ -19,7 +19,7 @@
 led to different research groups and software using in-house and/or tool
 specific ways to describe the same information.
 %
-\newtxt{An common example of such an annotation is the so called `gene association' used to assess the effect of gene deletions on a reaction network.}
+\newtxt{A common example of such an annotation is the so called `gene association' used to assess the effect of gene deletions on a reaction network.}
 %
 While a step in the right direction this format is not suitable for implementation in SBML~Level~3.
 

Modified: trunk/specifications/sbml-level-3/version-1/fbc/spec/best-practices.tex
===================================================================
--- trunk/specifications/sbml-level-3/version-1/fbc/spec/best-practices.tex	2014-11-27 20:44:43 UTC (rev 21771)
+++ trunk/specifications/sbml-level-3/version-1/fbc/spec/best-practices.tex	2014-11-28 07:25:45 UTC (rev 21772)
@@ -45,7 +45,8 @@
 
 \paragraph{The \SBML Level 3 \Reaction and \FluxBound}
 
-As an example and where (unambiguously) possible the \SBML Level 2 annotation has been converted into MIRIAM compliant RDF, in this case the \textit{EC number}. In addition this example highlights an open issue, namely, how to deal with the information currently encoded in the \Notes element. Currently this information is not completely encodable using the current \SBML annotation mechanism, however, for an example of an alternative mechanism, implemented as a tool specific annotation please see \ref{future}.
+As an example and where (unambiguously) possible the \SBML Level 2 annotation has been converted into MIRIAM compliant RDF, in this case the \textit{EC number}. In addition this example highlights an open issue, namely, how to deal with the information currently encoded in the \Notes element. Currently this information is not completely encodable using the current \SBML annotation mechanism, however, that issue is currently discussed on the PWG.
+%for an example of an alternative mechanism, implemented as a tool specific annotation please see \ref{future}.
 %
 \exampleFile{examples/ex_reaction_l3_nokv.txt}
 %

Modified: trunk/specifications/sbml-level-3/version-1/fbc/spec/main.pdf
===================================================================
--- trunk/specifications/sbml-level-3/version-1/fbc/spec/main.pdf	2014-11-27 20:44:43 UTC (rev 21771)
+++ trunk/specifications/sbml-level-3/version-1/fbc/spec/main.pdf	2014-11-28 07:25:45 UTC (rev 21772)
@@ -259,13 +259,13 @@
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