Menu
▾
▴
[Sashimi-commit] trans_proteomic_pipeline/src Makefile,1.26,1.27
|
From: Brian P. <pcb...@us...> - 2005-11-21 23:12:11
|
Update of /cvsroot/sashimi/trans_proteomic_pipeline/src In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv11508/trans_proteomic_pipeline/src Modified Files: Makefile Log Message: 1) Added integrated regression test support for major C++ implemented TPP components called by xinteract. See TESTING doc for details. 2) Moving toward use of .pepXML instead of .xml as standard pepXML filename extension (much as we do with .mzXML), but still actually using .xml at this time - the actual choice has been virtualized, though. Still need to modify perl CGIs to handle the switch (or rather, to handle any extension thrown at them, as continued support for .xml extension for pepXML files is required). 3) Some cleanups of unused variables etc that were causing noisy compiles, and portability tweaks. Index: Makefile =================================================================== RCS file: /cvsroot/sashimi/trans_proteomic_pipeline/src/Makefile,v retrieving revision 1.26 retrieving revision 1.27 diff -C2 -d -r1.26 -r1.27 *** Makefile 20 Oct 2005 16:04:59 -0000 1.26 --- Makefile 21 Nov 2005 23:11:32 -0000 1.27 *************** *** 295,309 **** endif ! PeptideProphetParser: PeptideProphetParserMain.o MixtureModel.o Tag.o MixtureDistr.o DiscrimValMixtureDistr.o DiscreteMixtureDistr.o NTTMixtureDistr.o NMCMixtureDistr.o ICATMixtureDistr.o DiscriminantFunction.o SequestDiscrimFunction.o AbbrevSequestDiscrimFunction.o ToftofAbbrevSequestDiscrimFunction.o Distribution.o DiscreteDistribution.o ContinuousDistribution.o GaussianDistribution.o GammaDistribution.o ContinuousMultimixtureDistr.o DecayContinuousMultimixtureDistr.o SearchResult.o SequestResult.o MassDifferenceDiscrMixtureDistr.o VariableOffsetMassDiffDiscrMixtureDistr.o ExtremeValueDistribution.o GlycMixtureDistr.o PeptideProphetParser.o Parser.o OrderedResult.o PeptideProphetOptions.o Spectrum.o TPPVersionInfo.o TagFilter.o MascotDiscrimValMixtureDistr.o MascotDiscrimFunction.o MascotResult.o MixtureDistrFactory.o MascotScoreParser.o CometDiscrimValMixtureDistr.o CometDiscrimFunction.o CometResult.o Option.o pIMixtureDistr.o pICalculator.o ModificationInfo.o VariableOffsetpIMixtureDistr.o ResidueMass.o ProbIDResult.o ProbIDDiscrimFunction.o ProbIDDiscrimValMixtureDistr.o ProteolyticEnzyme.o SearchParams.o ! $(LD) $(DEBUG) -O3 -o PeptideProphetParser PeptideProphetParserMain.o MixtureModel.o Tag.o MixtureDistr.o DiscrimValMixtureDistr.o DiscreteMixtureDistr.o NTTMixtureDistr.o NMCMixtureDistr.o ICATMixtureDistr.o DiscriminantFunction.o SequestDiscrimFunction.o AbbrevSequestDiscrimFunction.o ToftofAbbrevSequestDiscrimFunction.o Distribution.o DiscreteDistribution.o ContinuousDistribution.o GaussianDistribution.o GammaDistribution.o ContinuousMultimixtureDistr.o DecayContinuousMultimixtureDistr.o SearchResult.o SequestResult.o MassDifferenceDiscrMixtureDistr.o VariableOffsetMassDiffDiscrMixtureDistr.o ExtremeValueDistribution.o GlycMixtureDistr.o PeptideProphetParser.o Parser.o OrderedResult.o PeptideProphetOptions.o Spectrum.o TPPVersionInfo.o TagFilter.o MascotDiscrimValMixtureDistr.o MascotDiscrimFunction.o MascotResult.o MixtureDistrFactory.o MascotScoreParser.o CometDiscrimValMixtureDistr.o CometDiscrimFunction.o CometResult.o Option.o pIMixtureDistr.o pICalculator.o ModificationInfo.o VariableOffsetpIMixtureDistr.o ResidueMass.o ProbIDResult.o ProbIDDiscrimFunction.o ProbIDDiscrimValMixtureDistr.o ProteolyticEnzyme.o SearchParams.o $(LDFLAGS) EnzymeDigestionParser: EnzymeDigestionParserMain.o EnzymeDigestionParser.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o $(LD) $(DEBUG) -O3 -o EnzymeDigestionParser EnzymeDigestionParserMain.o EnzymeDigestionParser.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o ! XPressPeptideParser: XPressPeptideParserMain.o XPressPeptideParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ResidueMass.o ModificationInfo.o ! $(LD) $(DEBUG) -O3 -o XPressPeptideParser XPressPeptideParserMain.o XPressPeptideParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ResidueMass.o ModificationInfo.o ! ASAPRatioPeptideParser: ASAPRatioPeptideParserMain.o ASAPRatioPeptideParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ResidueMass.o ModificationInfo.o ! $(LD) $(DEBUG) -O3 -o ASAPRatioPeptideParser ASAPRatioPeptideParserMain.o ASAPRatioPeptideParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ResidueMass.o ModificationInfo.o xpress-prophet-update.cgi : XPressCGIParser.o Tag.o Parser.o TPPVersionInfo.o TagFilter.o XPressCGIParser.o xpresscgimain.o --- 295,309 ---- endif ! PeptideProphetParser: PeptideProphetParserMain.o MixtureModel.o Tag.o TagListComparator.o MixtureDistr.o DiscrimValMixtureDistr.o DiscreteMixtureDistr.o NTTMixtureDistr.o NMCMixtureDistr.o ICATMixtureDistr.o DiscriminantFunction.o SequestDiscrimFunction.o AbbrevSequestDiscrimFunction.o ToftofAbbrevSequestDiscrimFunction.o Distribution.o DiscreteDistribution.o ContinuousDistribution.o GaussianDistribution.o GammaDistribution.o ContinuousMultimixtureDistr.o DecayContinuousMultimixtureDistr.o SearchResult.o SequestResult.o MassDifferenceDiscrMixtureDistr.o VariableOffsetMassDiffDiscrMixtureDistr.o ExtremeValueDistribution.o GlycMixtureDistr.o PeptideProphetParser.o Parser.o OrderedResult.o PeptideProphetOptions.o Spectrum.o TPPVersionInfo.o TagFilter.o MascotDiscrimValMixtureDistr.o MascotDiscrimFunction.o MascotResult.o MixtureDistrFactory.o MascotScoreParser.o CometDiscrimValMixtureDistr.o CometDiscrimFunction.o CometResult.o Option.o pIMixtureDistr.o pICalculator.o ModificationInfo.o VariableOffsetpIMixtureDistr.o ResidueMass.o ProbIDResult.o ProbIDDiscrimFunction.o ProbIDDiscrimValMixtureDistr.o ProteolyticEnzyme.o SearchParams.o ! $(LD) $(DEBUG) -O3 -o PeptideProphetParser PeptideProphetParserMain.o MixtureModel.o Tag.o TagListComparator.o MixtureDistr.o DiscrimValMixtureDistr.o DiscreteMixtureDistr.o NTTMixtureDistr.o NMCMixtureDistr.o ICATMixtureDistr.o DiscriminantFunction.o SequestDiscrimFunction.o AbbrevSequestDiscrimFunction.o ToftofAbbrevSequestDiscrimFunction.o Distribution.o DiscreteDistribution.o ContinuousDistribution.o GaussianDistribution.o GammaDistribution.o ContinuousMultimixtureDistr.o DecayContinuousMultimixtureDistr.o SearchResult.o SequestResult.o MassDifferenceDiscrMixtureDistr.o VariableOffsetMassDiffDiscrMixtureDistr.o ExtremeValueDistribution.o GlycMixtureDistr.o PeptideProphetParser.o Parser.o OrderedResult.o PeptideProphetOptions.o Spectrum.o TPPVersionInfo.o TagFilter.o MascotDiscrimValMixtureDistr.o MascotDiscrimFunction.o MascotResult.o MixtureDistrFactory.o MascotScoreParser.o CometDiscrimValMixtureDistr.o CometDiscrimFunction.o CometResult.o Option.o pIMixtureDistr.o pICalculator.o ModificationInfo.o VariableOffsetpIMixtureDistr.o ResidueMass.o ProbIDResult.o ProbIDDiscrimFunction.o ProbIDDiscrimValMixtureDistr.o ProteolyticEnzyme.o SearchParams.o $(LDFLAGS) EnzymeDigestionParser: EnzymeDigestionParserMain.o EnzymeDigestionParser.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o $(LD) $(DEBUG) -O3 -o EnzymeDigestionParser EnzymeDigestionParserMain.o EnzymeDigestionParser.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o ! XPressPeptideParser: XPressPeptideParserMain.o XPressPeptideParser.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ResidueMass.o ModificationInfo.o ! $(LD) $(DEBUG) -O3 -o XPressPeptideParser XPressPeptideParserMain.o XPressPeptideParser.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ResidueMass.o ModificationInfo.o ! ASAPRatioPeptideParser: ASAPRatioPeptideParserMain.o ASAPRatioPeptideParser.o Parser.o TagListComparator.o Tag.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ResidueMass.o ModificationInfo.o ! $(LD) $(DEBUG) -O3 -o ASAPRatioPeptideParser ASAPRatioPeptideParserMain.o ASAPRatioPeptideParser.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ResidueMass.o ModificationInfo.o xpress-prophet-update.cgi : XPressCGIParser.o Tag.o Parser.o TPPVersionInfo.o TagFilter.o XPressCGIParser.o xpresscgimain.o *************** *** 313,318 **** $(LD) $(DEBUG) -O3 -o ASAPRatioPeptideCGIDisplayParser.cgi ASAPRatioPeptideCGIDisplayParserMain.o ASAPRatioPeptideCGIDisplayParser.o ASAPRatioPeptideUpdateParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ASAPRatio_numFns.o ASAPRatio_pepFns.o ASAPRatio_txtFns.o ramp.o base64.o util.o ! ASAPRatioProteinRatioParser : ASAPRatioProteinRatioParserMain.o ASAPRatioProteinRatioParser.o ASAPRatioGroupPeptideParser.o ASAPProteinRatio.o ASAPRatioPeptideParser.o ASAPRatioMSMSSeqData.o UniquePeptide.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ModificationInfo.o ResidueMass.o ASAPRatioPvalueParser.o Normalization.o PvalueModel.o ! $(LD) $(DEBUG) -O3 -o ASAPRatioProteinRatioParser ASAPRatioProteinRatioParserMain.o ASAPRatioProteinRatioParser.o ASAPRatioGroupPeptideParser.o ASAPProteinRatio.o ASAPRatioPeptideParser.o ASAPRatioMSMSSeqData.o UniquePeptide.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ModificationInfo.o ResidueMass.o ASAPRatioPvalueParser.o Normalization.o PvalueModel.o # --- 313,318 ---- $(LD) $(DEBUG) -O3 -o ASAPRatioPeptideCGIDisplayParser.cgi ASAPRatioPeptideCGIDisplayParserMain.o ASAPRatioPeptideCGIDisplayParser.o ASAPRatioPeptideUpdateParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ASAPRatio_numFns.o ASAPRatio_pepFns.o ASAPRatio_txtFns.o ramp.o base64.o util.o ! ASAPRatioProteinRatioParser : ASAPRatioProteinRatioParserMain.o ASAPRatioProteinRatioParser.o ASAPRatioGroupPeptideParser.o ASAPProteinRatio.o ASAPRatioPeptideParser.o ASAPRatioMSMSSeqData.o UniquePeptide.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ModificationInfo.o ResidueMass.o ASAPRatioPvalueParser.o Normalization.o PvalueModel.o util.o ! $(LD) $(DEBUG) -O3 -o ASAPRatioProteinRatioParser ASAPRatioProteinRatioParserMain.o ASAPRatioProteinRatioParser.o ASAPRatioGroupPeptideParser.o ASAPProteinRatio.o ASAPRatioPeptideParser.o ASAPRatioMSMSSeqData.o UniquePeptide.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o ramp.o base64.o ModificationInfo.o ResidueMass.o ASAPRatioPvalueParser.o util.o Normalization.o PvalueModel.o # *************** *** 321,326 **** ! InteractParser: InteractParserMain.o InteractParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o ResidueMass.o OuterTag.o ! $(LD) $(DEBUG) -O3 -o InteractParser InteractParserMain.o InteractParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o ResidueMass.o OuterTag.o DatabaseParser: DatabaseParserMain.o DatabaseParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o --- 321,326 ---- ! InteractParser: InteractParserMain.o InteractParser.o Parser.o Tag.o TagListComparator.o util.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o ResidueMass.o OuterTag.o ! $(LD) $(DEBUG) -O3 -o InteractParser InteractParserMain.o InteractParser.o Parser.o Tag.o TagListComparator.o util.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o ResidueMass.o OuterTag.o DatabaseParser: DatabaseParserMain.o DatabaseParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o *************** *** 328,336 **** ! RefreshParser: RefreshParserMain.o RefreshParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ProteolyticEnzyme.o SearchParams.o ModificationInfo.o kwset.o obstack.o ResidueMass.o ! $(LD) ${CFLAGS} $(DEBUG) -O3 -o RefreshParser RefreshParserMain.o RefreshParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ProteolyticEnzyme.o SearchParams.o ModificationInfo.o kwset.o obstack.o ResidueMass.o ${LDFLAGS} ! ModelParser.cgi : ModelParserMain.o ModelParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o util.o MixtureModel.o MixtureDistr.o DiscrimValMixtureDistr.o DiscreteMixtureDistr.o NTTMixtureDistr.o NMCMixtureDistr.o ICATMixtureDistr.o DiscriminantFunction.o SequestDiscrimFunction.o AbbrevSequestDiscrimFunction.o ToftofAbbrevSequestDiscrimFunction.o Distribution.o DiscreteDistribution.o ContinuousDistribution.o GaussianDistribution.o GammaDistribution.o ContinuousMultimixtureDistr.o DecayContinuousMultimixtureDistr.o SearchResult.o SequestResult.o MassDifferenceDiscrMixtureDistr.o VariableOffsetMassDiffDiscrMixtureDistr.o ExtremeValueDistribution.o GlycMixtureDistr.o PeptideProphetParser.o OrderedResult.o PeptideProphetOptions.o Spectrum.o MascotDiscrimValMixtureDistr.o MascotDiscrimFunction.o MascotResult.o MixtureDistrFactory.o MascotScoreParser.o CometDiscrimValMixtureDistr.o CometDiscrimFunction.o CometResult.o Option.o pIMixtureDistr.o pICalculator.o ModificationInfo.o VariableOffsetpIMixtureDistr.o ResidueMass.o ProbIDResult.o ProbIDDiscrimFunction.o ProbIDDiscrimValMixtureDistr.o ProteolyticEnzyme.o SearchParams.o ! $(LD) $(DEBUG) -O3 -o ModelParser.cgi ModelParserMain.o ModelParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o util.o MixtureModel.o MixtureDistr.o DiscrimValMixtureDistr.o DiscreteMixtureDistr.o NTTMixtureDistr.o NMCMixtureDistr.o ICATMixtureDistr.o DiscriminantFunction.o SequestDiscrimFunction.o AbbrevSequestDiscrimFunction.o ToftofAbbrevSequestDiscrimFunction.o Distribution.o DiscreteDistribution.o ContinuousDistribution.o GaussianDistribution.o GammaDistribution.o ContinuousMultimixtureDistr.o DecayContinuousMultimixtureDistr.o SearchResult.o SequestResult.o MassDifferenceDiscrMixtureDistr.o VariableOffsetMassDiffDiscrMixtureDistr.o ExtremeValueDistribution.o GlycMixtureDistr.o PeptideProphetParser.o OrderedResult.o PeptideProphetOptions.o Spectrum.o MascotDiscrimValMixtureDistr.o MascotDiscrimFunction.o MascotResult.o MixtureDistrFactory.o MascotScoreParser.o CometDiscrimValMixtureDistr.o CometDiscrimFunction.o CometResult.o Option.o pIMixtureDistr.o pICalculator.o ModificationInfo.o VariableOffsetpIMixtureDistr.o ResidueMass.o ProbIDResult.o ProbIDDiscrimFunction.o ProbIDDiscrimValMixtureDistr.o ProteolyticEnzyme.o SearchParams.o --- 328,336 ---- ! RefreshParser: RefreshParserMain.o RefreshParser.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o ProteolyticEnzyme.o SearchParams.o ModificationInfo.o kwset.o obstack.o ResidueMass.o ! $(LD) ${CFLAGS} $(DEBUG) -O3 -o RefreshParser RefreshParserMain.o RefreshParser.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o ProteolyticEnzyme.o SearchParams.o ModificationInfo.o kwset.o obstack.o ResidueMass.o ${LDFLAGS} ! ModelParser.cgi : ModelParserMain.o ModelParser.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o util.o MixtureModel.o MixtureDistr.o DiscrimValMixtureDistr.o DiscreteMixtureDistr.o NTTMixtureDistr.o NMCMixtureDistr.o ICATMixtureDistr.o DiscriminantFunction.o SequestDiscrimFunction.o AbbrevSequestDiscrimFunction.o ToftofAbbrevSequestDiscrimFunction.o Distribution.o DiscreteDistribution.o ContinuousDistribution.o GaussianDistribution.o GammaDistribution.o ContinuousMultimixtureDistr.o DecayContinuousMultimixtureDistr.o SearchResult.o SequestResult.o MassDifferenceDiscrMixtureDistr.o VariableOffsetMassDiffDiscrMixtureDistr.o ExtremeValueDistribution.o GlycMixtureDistr.o PeptideProphetParser.o OrderedResult.o PeptideProphetOptions.o Spectrum.o MascotDiscrimValMixtureDistr.o MascotDiscrimFunction.o MascotResult.o MixtureDistrFactory.o MascotScoreParser.o CometDiscrimValMixtureDistr.o CometDiscrimFunction.o CometResult.o Option.o pIMixtureDistr.o pICalculator.o ModificationInfo.o VariableOffsetpIMixtureDistr.o ResidueMass.o ProbIDResult.o ProbIDDiscrimFunction.o ProbIDDiscrimValMixtureDistr.o ProteolyticEnzyme.o SearchParams.o ! $(LD) $(DEBUG) -O3 -o ModelParser.cgi ModelParserMain.o ModelParser.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o util.o MixtureModel.o MixtureDistr.o DiscrimValMixtureDistr.o DiscreteMixtureDistr.o NTTMixtureDistr.o NMCMixtureDistr.o ICATMixtureDistr.o DiscriminantFunction.o SequestDiscrimFunction.o AbbrevSequestDiscrimFunction.o ToftofAbbrevSequestDiscrimFunction.o Distribution.o DiscreteDistribution.o ContinuousDistribution.o GaussianDistribution.o GammaDistribution.o ContinuousMultimixtureDistr.o DecayContinuousMultimixtureDistr.o SearchResult.o SequestResult.o MassDifferenceDiscrMixtureDistr.o VariableOffsetMassDiffDiscrMixtureDistr.o ExtremeValueDistribution.o GlycMixtureDistr.o PeptideProphetParser.o OrderedResult.o PeptideProphetOptions.o Spectrum.o MascotDiscrimValMixtureDistr.o MascotDiscrimFunction.o MascotResult.o MixtureDistrFactory.o MascotScoreParser.o CometDiscrimValMixtureDistr.o CometDiscrimFunction.o CometResult.o Option.o pIMixtureDistr.o pICalculator.o ModificationInfo.o VariableOffsetpIMixtureDistr.o ResidueMass.o ProbIDResult.o ProbIDDiscrimFunction.o ProbIDDiscrimValMixtureDistr.o ProteolyticEnzyme.o SearchParams.o *************** *** 341,365 **** # $(LD) $(DEBUG) -O3 -o XPressPeptideUpdateParser.cgi XPressPeptideUpdateParserMain.o XPressPeptideUpdateParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ramp.o base64.o gd.o gdfonts.o util.o ! XPressProteinRatioParser : XPressProteinRatioParserMain.o XPressProteinRatioParser.o XPressGroupPeptideParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ! $(LD) $(DEBUG) -O3 -o XPressProteinRatioParser XPressProteinRatioParserMain.o XPressProteinRatioParser.o XPressGroupPeptideParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ! XPressCGIProteinDisplayParser.cgi : XPressCGIProteinDisplayMain.o XPressCGIProteinDisplay.o XPressGroupPeptideParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ! $(LD) $(DEBUG) -O3 -o XPressCGIProteinDisplayParser.cgi XPressCGIProteinDisplayMain.o XPressCGIProteinDisplay.o XPressGroupPeptideParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ! ASAPRatioPvalueParser : ASAPRatioPvalueParserMain.o Tag.o Parser.o ASAPRatioPvalueParser.o Normalization.o PvalueModel.o TPPVersionInfo.o TagFilter.o ! $(LD) $(DEBUG) -O3 -o ASAPRatioPvalueParser ASAPRatioPvalueParserMain.o Tag.o Parser.o ASAPRatioPvalueParser.o Normalization.o PvalueModel.o TPPVersionInfo.o TagFilter.o -lm ! LibraPeptideParser : LibraPeptideParserMain.o LibraPeptideParser.o Tag.o Parser.o TagFilter.o Intensity.o Quantitation.o ramp.o base64.o LibraConditionHandler.o LibraResult.o LibraSummary.o LibraWrapper.o ! $(LD) $(DEBUG) -O3 -o LibraPeptideParser LibraPeptideParserMain.o LibraPeptideParser.o Tag.o Parser.o TagFilter.o Intensity.o Quantitation.o ramp.o base64.o LibraConditionHandler.o LibraResult.o LibraSummary.o LibraWrapper.o ! LibraProteinRatioParser : LibraProteinRatioParserMain.o LibraProteinRatioParser.o LibraGroupPeptideParser.o Parser.o Tag.o TagFilter.o LibraConditionHandler2.o StringConvertor.o ! $(LD) $(DEBUG) -O3 -o LibraProteinRatioParser LibraProteinRatioParserMain.o LibraProteinRatioParser.o LibraGroupPeptideParser.o Parser.o Tag.o TagFilter.o LibraConditionHandler2.o StringConvertor.o # ! Pep3D_xml.cgi : cgi_Pep3D_xml.o Pep3D_functions.o base64.o ramp.o Pep3DParser.o BasenameParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ! $(LD) $(DEBUG) -O3 -o Pep3D_xml.cgi cgi_Pep3D_xml.o Pep3D_functions.o base64.o ramp.o Pep3DParser.o BasenameParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o $(GD_LIB) -lm -lpng # --- 341,365 ---- # $(LD) $(DEBUG) -O3 -o XPressPeptideUpdateParser.cgi XPressPeptideUpdateParserMain.o XPressPeptideUpdateParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ramp.o base64.o gd.o gdfonts.o util.o ! XPressProteinRatioParser : XPressProteinRatioParserMain.o XPressProteinRatioParser.o XPressGroupPeptideParser.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o ! $(LD) $(DEBUG) -O3 -o XPressProteinRatioParser XPressProteinRatioParserMain.o XPressProteinRatioParser.o XPressGroupPeptideParser.o Parser.o Tag.o TagListComparator.o TPPVersionInfo.o TagFilter.o ! XPressCGIProteinDisplayParser.cgi : XPressCGIProteinDisplayMain.o XPressCGIProteinDisplay.o XPressGroupPeptideParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o util.o ! $(LD) $(DEBUG) -O3 -o XPressCGIProteinDisplayParser.cgi XPressCGIProteinDisplayMain.o XPressCGIProteinDisplay.o XPressGroupPeptideParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o util.o ! ASAPRatioPvalueParser : ASAPRatioPvalueParserMain.o Tag.o TagListComparator.o Parser.o ASAPRatioPvalueParser.o Normalization.o PvalueModel.o TPPVersionInfo.o TagFilter.o ! $(LD) $(DEBUG) -O3 -o ASAPRatioPvalueParser ASAPRatioPvalueParserMain.o Tag.o TagListComparator.o Parser.o ASAPRatioPvalueParser.o util.o Normalization.o PvalueModel.o TPPVersionInfo.o TagFilter.o -lm ! LibraPeptideParser : LibraPeptideParserMain.o LibraPeptideParser.o Tag.o TagListComparator.o Parser.o TagFilter.o Intensity.o Quantitation.o ramp.o base64.o LibraConditionHandler.o LibraResult.o LibraSummary.o LibraWrapper.o ! $(LD) $(DEBUG) -O3 -o LibraPeptideParser LibraPeptideParserMain.o LibraPeptideParser.o Tag.o TagListComparator.o Parser.o TagFilter.o Intensity.o Quantitation.o ramp.o base64.o LibraConditionHandler.o LibraResult.o LibraSummary.o LibraWrapper.o ! LibraProteinRatioParser : LibraProteinRatioParserMain.o LibraProteinRatioParser.o LibraGroupPeptideParser.o Parser.o Tag.o TagListComparator.o TagFilter.o LibraConditionHandler2.o StringConvertor.o ! $(LD) $(DEBUG) -O3 -o LibraProteinRatioParser LibraProteinRatioParserMain.o LibraProteinRatioParser.o LibraGroupPeptideParser.o TagListComparator.o Parser.o Tag.o TagFilter.o LibraConditionHandler2.o StringConvertor.o # ! Pep3D_xml.cgi : cgi_Pep3D_xml.o Pep3D_functions.o base64.o ramp.o util.o Pep3DParser.o BasenameParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ! $(LD) $(DEBUG) -O3 -o Pep3D_xml.cgi cgi_Pep3D_xml.o Pep3D_functions.o util.o base64.o ramp.o Pep3DParser.o BasenameParser.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o $(GD_LIB) -lm -lpng # *************** *** 381,392 **** $(LD) $(DEBUG) -O3 -o Sequest2XML Sequest2XML.o SequestResult.o SearchResult.o SequestParams.o SearchParams.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Tag.o ramp.o base64.o ModificationInfo.o pICalculator.o ICATMixtureDistr.o DiscreteMixtureDistr.o MixtureDistr.o Distribution.o GammaDistribution.o GaussianDistribution.o DiscreteDistribution.o ContinuousDistribution.o ModifiedResidueMass.o ResidueMass.o Parser.o TPPVersionInfo.o TagFilter.o ! Mascot2XML : MascotConverterMain.o MascotConverter.o ramp.o base64.o Tag.o MascotModification.o ResidueMass.o ModificationInfo.o pICalculator.o SearchParams.o ICATMixtureDistr.o DiscreteMixtureDistr.o MixtureDistr.o Distribution.o GammaDistribution.o GaussianDistribution.o DiscreteDistribution.o ContinuousDistribution.o SearchResult.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o TPPVersionInfo.o TagFilter.o ! $(LD) $(DEBUG) -O3 -o Mascot2XML MascotConverter.o MascotConverterMain.o ramp.o base64.o Tag.o MascotModification.o ResidueMass.o ModificationInfo.o pICalculator.o SearchParams.o ICATMixtureDistr.o DiscreteMixtureDistr.o MixtureDistr.o Distribution.o GammaDistribution.o GaussianDistribution.o DiscreteDistribution.o ContinuousDistribution.o SearchResult.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o TPPVersionInfo.o TagFilter.o $(LDFLAGS) Comet2XML : Comet2xml.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o ramp.o base64.o $(LD) $(DEBUG) -O3 -o Comet2XML Comet2xml.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o ramp.o base64.o ! Tandem2XML : Tandem2xml.o TandemParamsParser.o TandemResultsParser.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o masscalc.o saxhandler.o ramp.o base64.o ! $(LD) $(DEBUG) -O3 -o Tandem2XML Tandem2xml.o TandemParamsParser.o TandemResultsParser.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o saxhandler.o masscalc.o ramp.o base64.o -lexpat comet-fastadb.cgi : comet-fastadb1.o calc_pI.o util.o ProteolyticEnzyme.o ProteolyticEnzymeFactory.o ModificationInfo.o SearchParams.o Tag.o TPPVersionInfo.o TagFilter.o --- 381,392 ---- $(LD) $(DEBUG) -O3 -o Sequest2XML Sequest2XML.o SequestResult.o SearchResult.o SequestParams.o SearchParams.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Tag.o ramp.o base64.o ModificationInfo.o pICalculator.o ICATMixtureDistr.o DiscreteMixtureDistr.o MixtureDistr.o Distribution.o GammaDistribution.o GaussianDistribution.o DiscreteDistribution.o ContinuousDistribution.o ModifiedResidueMass.o ResidueMass.o Parser.o TPPVersionInfo.o TagFilter.o ! Mascot2XML : MascotConverterMain.o MascotConverter.o ramp.o util.o base64.o Tag.o MascotModification.o ResidueMass.o ModificationInfo.o pICalculator.o SearchParams.o ICATMixtureDistr.o DiscreteMixtureDistr.o MixtureDistr.o Distribution.o GammaDistribution.o GaussianDistribution.o DiscreteDistribution.o ContinuousDistribution.o SearchResult.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o TPPVersionInfo.o TagFilter.o ! $(LD) $(DEBUG) -O3 -o Mascot2XML MascotConverter.o MascotConverterMain.o ramp.o util.o base64.o Tag.o MascotModification.o ResidueMass.o ModificationInfo.o pICalculator.o SearchParams.o ICATMixtureDistr.o DiscreteMixtureDistr.o MixtureDistr.o Distribution.o GammaDistribution.o GaussianDistribution.o DiscreteDistribution.o ContinuousDistribution.o SearchResult.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o TPPVersionInfo.o TagFilter.o $(LDFLAGS) $(WWW_LIBS) Comet2XML : Comet2xml.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o ramp.o base64.o $(LD) $(DEBUG) -O3 -o Comet2XML Comet2xml.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o ramp.o base64.o ! Tandem2XML : Tandem2xml.o TandemParamsParser.o TandemResultsParser.o util.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Parser.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o masscalc.o saxhandler.o ramp.o base64.o ! $(LD) $(DEBUG) -O3 -o Tandem2XML Tandem2xml.o TandemParamsParser.o util.o TandemResultsParser.o ProteolyticEnzymeFactory.o ProteolyticEnzyme.o Tag.o TPPVersionInfo.o TagFilter.o ModificationInfo.o SearchParams.o saxhandler.o masscalc.o ramp.o base64.o -lexpat comet-fastadb.cgi : comet-fastadb1.o calc_pI.o util.o ProteolyticEnzyme.o ProteolyticEnzymeFactory.o ModificationInfo.o SearchParams.o Tag.o TPPVersionInfo.o TagFilter.o *************** *** 402,410 **** $(LD) $(DEBUG) -O3 -o cometresult.cgi cometresult1.o util.o TPPVersionInfo.o $(LDFLAGS) ! xinteract : xinteract.o TPPVersionInfo.o ! $(LD) $(DEBUG) -O3 -o xinteract xinteract.o TPPVersionInfo.o ! runprophet: runprophet.o TPPVersionInfo.o ! $(LD) $(DEBUG) -O3 -o runprophet runprophet.o TPPVersionInfo.o runperl: runperl.o TPPVersionInfo.o --- 402,410 ---- $(LD) $(DEBUG) -O3 -o cometresult.cgi cometresult1.o util.o TPPVersionInfo.o $(LDFLAGS) ! xinteract : xinteract.o TPPVersionInfo.o util.o ! $(LD) $(DEBUG) -O3 -o xinteract xinteract.o TPPVersionInfo.o util.o ! runprophet: runprophet.o TPPVersionInfo.o util.o ! $(LD) $(DEBUG) -O3 -o runprophet runprophet.o TPPVersionInfo.o util.o runperl: runperl.o TPPVersionInfo.o *************** *** 448,452 **** SpectrumParser.o : SpectrumParser.cxx SpectrumParser.h Parser.h Tag.h Array.h sysdepend.h constants.h TagFilter.h ASAP_structs.h ProDataComponent.h SearchResult.h ModificationInfo.h SearchParams.h Option.h ramp.h base64.h ResidueMass.h constants.h SequestResult.h MascotResult.h CometResult.h ASAPRatio_numFns.h ! cgi_Pep3D_xml.o: cgi_Pep3D_xml.c Pep3D_functions.h ramp.h base64.h constants.h ASAPRatio_numFns.h Pep3DParser.h Parser.h Tag.h Array.h sysdepend.h TagFilter.h BasenameParser.h Pep3D_functions.o : Pep3D_functions.c Pep3D_functions.h ramp.h base64.h constants.h ASAPRatio_numFns.h --- 448,452 ---- SpectrumParser.o : SpectrumParser.cxx SpectrumParser.h Parser.h Tag.h Array.h sysdepend.h constants.h TagFilter.h ASAP_structs.h ProDataComponent.h SearchResult.h ModificationInfo.h SearchParams.h Option.h ramp.h base64.h ResidueMass.h constants.h SequestResult.h MascotResult.h CometResult.h ASAPRatio_numFns.h ! cgi_Pep3D_xml.o: cgi_Pep3D_xml.c Pep3D_functions.h ramp.h base64.h util.h constants.h ASAPRatio_numFns.h Pep3DParser.h Parser.h Tag.h Array.h sysdepend.h TagFilter.h BasenameParser.h Pep3D_functions.o : Pep3D_functions.c Pep3D_functions.h ramp.h base64.h constants.h ASAPRatio_numFns.h *************** *** 582,586 **** XPressPeptideParserMain.o : XPressPeptideParserMain.cxx XPressPeptideParser.h Parser.h Tag.h Array.h sysdepend.h constants.h TagFilter.h Option.h ramp.h base64.h ResidueMass.h constants.h ModificationInfo.h SearchParams.h ! XPressCGIProteinDisplay.o : XPressCGIProteinDisplay.cxx XPressCGIProteinDisplay.h constants.h XPressGroupPeptideParser.h Parser.h Tag.h Array.h sysdepend.h TagFilter.h Option.h ramp.h base64.h MixtureModel.h NMCMixtureDistr.h DiscreteMixtureDistr.h MixtureDistr.h GammaDistribution.h ContinuousDistribution.h Distribution.h GaussianDistribution.h DiscreteDistribution.h SearchResult.h ModificationInfo.h SearchParams.h ResidueMass.h constants.h NTTMixtureDistr.h GlycMixtureDistr.h DiscrimValMixtureDistr.h DecayContinuousMultimixtureDistr.h ContinuousMultimixtureDistr.h DiscriminantFunction.h AbbrevSequestDiscrimFunction.h SequestDiscrimFunction.h SequestResult.h MascotDiscrimValMixtureDistr.h ExtremeValueDistribution.h MascotDiscrimFunction.h MascotResult.h MascotScoreParser.h ICATMixtureDistr.h Spectrum.h OrderedResult.h MassDifferenceDiscrMixtureDistr.h VariableOffsetMassDiffDiscrMixtureDistr.h PeptideProphetOptions.h MixtureDistrFactory.h ProbIDResult.h CometDiscrimValMixtureDistr.h CometDiscrimFunction.h CometResult.h ProbIDDiscrimValMixtureDistr.h ProbIDDiscrimFunction.h pIMixtureDistr.h pICalculator.h VariableOffsetpIMixtureDistr.h XPressCGIProteinDisplayMain.o : XPressCGIProteinDisplayMain.cxx XPressCGIProteinDisplay.h constants.h XPressGroupPeptideParser.h Parser.h Tag.h Array.h sysdepend.h TagFilter.h Option.h ramp.h base64.h MixtureModel.h NMCMixtureDistr.h DiscreteMixtureDistr.h MixtureDistr.h GammaDistribution.h ContinuousDistribution.h Distribution.h GaussianDistribution.h DiscreteDistribution.h SearchResult.h ModificationInfo.h SearchParams.h ResidueMass.h constants.h NTTMixtureDistr.h GlycMixtureDistr.h DiscrimValMixtureDistr.h DecayContinuousMultimixtureDistr.h ContinuousMultimixtureDistr.h DiscriminantFunction.h AbbrevSequestDiscrimFunction.h SequestDiscrimFunction.h SequestResult.h MascotDiscrimValMixtureDistr.h ExtremeValueDistribution.h MascotDiscrimFunction.h MascotResult.h MascotScoreParser.h ICATMixtureDistr.h Spectrum.h OrderedResult.h MassDifferenceDiscrMixtureDistr.h VariableOffsetMassDiffDiscrMixtureDistr.h PeptideProphetOptions.h MixtureDistrFactory.h ProbIDResult.h CometDiscrimValMixtureDistr.h CometDiscrimFunction.h CometResult.h ProbIDDiscrimValMixtureDistr.h ProbIDDiscrimFunction.h pIMixtureDistr.h pICalculator.h VariableOffsetpIMixtureDistr.h --- 582,586 ---- XPressPeptideParserMain.o : XPressPeptideParserMain.cxx XPressPeptideParser.h Parser.h Tag.h Array.h sysdepend.h constants.h TagFilter.h Option.h ramp.h base64.h ResidueMass.h constants.h ModificationInfo.h SearchParams.h ! XPressCGIProteinDisplay.o : XPressCGIProteinDisplay.cxx XPressCGIProteinDisplay.h constants.h XPressGroupPeptideParser.h util.h Parser.h Tag.h Array.h sysdepend.h TagFilter.h Option.h ramp.h base64.h MixtureModel.h NMCMixtureDistr.h DiscreteMixtureDistr.h MixtureDistr.h GammaDistribution.h ContinuousDistribution.h Distribution.h GaussianDistribution.h DiscreteDistribution.h SearchResult.h ModificationInfo.h SearchParams.h ResidueMass.h constants.h NTTMixtureDistr.h GlycMixtureDistr.h DiscrimValMixtureDistr.h DecayContinuousMultimixtureDistr.h ContinuousMultimixtureDistr.h DiscriminantFunction.h AbbrevSequestDiscrimFunction.h SequestDiscrimFunction.h SequestResult.h MascotDiscrimValMixtureDistr.h ExtremeValueDistribution.h MascotDiscrimFunction.h MascotResult.h MascotScoreParser.h ICATMixtureDistr.h Spectrum.h OrderedResult.h MassDifferenceDiscrMixtureDistr.h VariableOffsetMassDiffDiscrMixtureDistr.h PeptideProphetOptions.h MixtureDistrFactory.h ProbIDResult.h CometDiscrimValMixtureDistr.h CometDiscrimFunction.h CometResult.h ProbIDDiscrimValMixtureDistr.h ProbIDDiscrimFunction.h pIMixtureDistr.h pICalculator.h VariableOffsetpIMixtureDistr.h XPressCGIProteinDisplayMain.o : XPressCGIProteinDisplayMain.cxx XPressCGIProteinDisplay.h constants.h XPressGroupPeptideParser.h Parser.h Tag.h Array.h sysdepend.h TagFilter.h Option.h ramp.h base64.h MixtureModel.h NMCMixtureDistr.h DiscreteMixtureDistr.h MixtureDistr.h GammaDistribution.h ContinuousDistribution.h Distribution.h GaussianDistribution.h DiscreteDistribution.h SearchResult.h ModificationInfo.h SearchParams.h ResidueMass.h constants.h NTTMixtureDistr.h GlycMixtureDistr.h DiscrimValMixtureDistr.h DecayContinuousMultimixtureDistr.h ContinuousMultimixtureDistr.h DiscriminantFunction.h AbbrevSequestDiscrimFunction.h SequestDiscrimFunction.h SequestResult.h MascotDiscrimValMixtureDistr.h ExtremeValueDistribution.h MascotDiscrimFunction.h MascotResult.h MascotScoreParser.h ICATMixtureDistr.h Spectrum.h OrderedResult.h MassDifferenceDiscrMixtureDistr.h VariableOffsetMassDiffDiscrMixtureDistr.h PeptideProphetOptions.h MixtureDistrFactory.h ProbIDResult.h CometDiscrimValMixtureDistr.h CometDiscrimFunction.h CometResult.h ProbIDDiscrimValMixtureDistr.h ProbIDDiscrimFunction.h pIMixtureDistr.h pICalculator.h VariableOffsetpIMixtureDistr.h *************** *** 627,631 **** ASAPRatio_txtFns.o : ASAPRatio_txtFns.c ASAPRatio_txtFns.h ! ASAPRatioPvalueParser.o : ASAPRatioPvalueParser.cxx ASAPRatioPvalueParser.h Parser.h Tag.h Array.h sysdepend.h constants.h TagFilter.h Ratio.h ASAP_structs.h PvalueModel.h Normalization.h ASAPRatioPvalueParserMain.o : ASAPRatioPvalueParserMain.cxx ASAPRatioPvalueParser.h Parser.h Tag.h Array.h sysdepend.h constants.h TagFilter.h Ratio.h ASAP_structs.h PvalueModel.h Normalization.h --- 627,631 ---- ASAPRatio_txtFns.o : ASAPRatio_txtFns.c ASAPRatio_txtFns.h ! ASAPRatioPvalueParser.o : ASAPRatioPvalueParser.cxx ASAPRatioPvalueParser.h Parser.h util.h Tag.h Array.h sysdepend.h constants.h TagFilter.h Ratio.h ASAP_structs.h PvalueModel.h Normalization.h ASAPRatioPvalueParserMain.o : ASAPRatioPvalueParserMain.cxx ASAPRatioPvalueParser.h Parser.h Tag.h Array.h sysdepend.h constants.h TagFilter.h Ratio.h ASAP_structs.h PvalueModel.h Normalization.h *************** *** 675,678 **** --- 675,680 ---- TagFilter.o : TagFilter.cxx TagFilter.h Tag.h Array.h sysdepend.h constants.h + TagListComparator.o : TagListComparator.cxx TagListComparator.h Tag.h Array.h sysdepend.h constants.h + DatabaseParser.o : DatabaseParser.cxx DatabaseParser.h Parser.h Tag.h Array.h sysdepend.h constants.h TagFilter.h *************** *** 707,711 **** SearchParams.o : SearchParams.cxx SearchParams.h constants.h sysdepend.h Array.h Tag.h ModificationInfo.h Option.h ramp.h base64.h ResidueMass.h constants.h ! MascotConverter.o : MascotConverter.cxx MascotConverter.h Array.h sysdepend.h constants.h SpectrumPeak.h ProteolyticEnzymeFactory.h ProteolyticEnzyme.h Tag.h ModificationInfo.h SearchParams.h Option.h ramp.h base64.h ResidueMass.h constants.h MascotModification.h pICalculator.h ICATMixtureDistr.h DiscreteMixtureDistr.h MixtureDistr.h GammaDistribution.h ContinuousDistribution.h Distribution.h GaussianDistribution.h DiscreteDistribution.h SearchResult.h Parser.h MascotConverterMain.o : MascotConverterMain.cxx MascotConverter.h Array.h sysdepend.h constants.h SpectrumPeak.h ProteolyticEnzymeFactory.h ProteolyticEnzyme.h Tag.h ModificationInfo.h SearchParams.h Option.h ramp.h base64.h ResidueMass.h constants.h MascotModification.h pICalculator.h ICATMixtureDistr.h DiscreteMixtureDistr.h MixtureDistr.h GammaDistribution.h ContinuousDistribution.h Distribution.h GaussianDistribution.h DiscreteDistribution.h SearchResult.h Parser.h --- 709,713 ---- SearchParams.o : SearchParams.cxx SearchParams.h constants.h sysdepend.h Array.h Tag.h ModificationInfo.h Option.h ramp.h base64.h ResidueMass.h constants.h ! MascotConverter.o : MascotConverter.cxx MascotConverter.h Array.h util.h sysdepend.h constants.h SpectrumPeak.h ProteolyticEnzymeFactory.h ProteolyticEnzyme.h Tag.h ModificationInfo.h SearchParams.h Option.h ramp.h base64.h ResidueMass.h constants.h MascotModification.h pICalculator.h ICATMixtureDistr.h DiscreteMixtureDistr.h MixtureDistr.h GammaDistribution.h ContinuousDistribution.h Distribution.h GaussianDistribution.h DiscreteDistribution.h SearchResult.h Parser.h MascotConverterMain.o : MascotConverterMain.cxx MascotConverter.h Array.h sysdepend.h constants.h SpectrumPeak.h ProteolyticEnzymeFactory.h ProteolyticEnzyme.h Tag.h ModificationInfo.h SearchParams.h Option.h ramp.h base64.h ResidueMass.h constants.h MascotModification.h pICalculator.h ICATMixtureDistr.h DiscreteMixtureDistr.h MixtureDistr.h GammaDistribution.h ContinuousDistribution.h Distribution.h GaussianDistribution.h DiscreteDistribution.h SearchResult.h Parser.h *************** *** 719,723 **** TandemParamsParser.o : TandemParamsParser.cxx TandemResultsParser.h ProteolyticEnzymeFactory.h ProteolyticEnzyme.h Parser.h Tag.h TagFilter.h ModificationInfo.h SearchParams.h masscalc.h saxhandler.h ramp.h base64.h ! TandemResultsParser.o : TandemResultsParser.cxx ProteolyticEnzymeFactory.h ProteolyticEnzyme.h Parser.h Tag.h TagFilter.h ModificationInfo.h SearchParams.h masscalc.h saxhandler.h ramp.h base64.h masscalc.o : masscalc.cxx masscalc.h --- 721,725 ---- TandemParamsParser.o : TandemParamsParser.cxx TandemResultsParser.h ProteolyticEnzymeFactory.h ProteolyticEnzyme.h Parser.h Tag.h TagFilter.h ModificationInfo.h SearchParams.h masscalc.h saxhandler.h ramp.h base64.h ! TandemResultsParser.o : TandemResultsParser.cxx ProteolyticEnzymeFactory.h util.h ProteolyticEnzyme.h Parser.h Tag.h TagFilter.h ModificationInfo.h SearchParams.h masscalc.h saxhandler.h ramp.h base64.h masscalc.o : masscalc.cxx masscalc.h |