[Sashimi-commit] SF.net SVN: sashimi:[5949] branches/4-6/trans_proteomic_pipeline/src/ Parsers/Algorithm2XML/Mascot2XML/MascotConverter.cxx

[<ds...@us...>]

Revision: 5949
          http://sashimi.svn.sourceforge.net/sashimi/?rev=5949&view=rev
Author:   dshteyn
Date:     2012-09-25 21:50:36 +0000 (Tue, 25 Sep 2012)
Log Message:
-----------
Mascot2XML: 5 digit scan numbers

Modified Paths:
--------------
    branches/4-6/trans_proteomic_pipeline/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.cxx

Modified: branches/4-6/trans_proteomic_pipeline/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.cxx
===================================================================
--- branches/4-6/trans_proteomic_pipeline/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.cxx	2012-09-25 21:04:55 UTC (rev 5948)
+++ branches/4-6/trans_proteomic_pipeline/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.cxx	2012-09-25 21:50:36 UTC (rev 5949)
@@ -589,7 +589,7 @@
       if(queryIndex == spectra_.length() + 1) {
         if(line_len > 8 && line[0] == 'n' && line[1] == 'u' && line[2] == 'm' && line[3] == '_' &&
           line[4] == 'u' && line[5] == 's' && line[6] == 'e' && line[7] == 'd') { // gone too far
-          const char generic_spec[] = "spectrum.0000.0000.";
+          const char generic_spec[] = "spectrum.00000.00000.";
 					const int next_alloc_len = (int)strlen(generic_spec)+12;
           char* next = new char[next_alloc_len];
           if(precursor_ioncharges_.length() > 0)
@@ -773,7 +773,7 @@
               nextspectrum[n++] = '.';
             }
             // cout << "Set Range: " << range << endl;
-            sprintf(nextspectrum+n,"%04ld.%04ld.",rangeStart,rangeEnd);
+            sprintf(nextspectrum+n,"%05ld.%05ld.",rangeStart,rangeEnd);
             n = (int)strlen(nextspectrum);
             if(spectra_.length() < precursor_ioncharges_.length())
               nextspectrum[n++] = '0' + precursor_ioncharges_[spectra_.length()];

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