[Sashimi-commit] SF.net SVN: sashimi:[5512] branches/4-5/trans_proteomic_pipeline/src/ Parsers/mzParser/saxmzmlhandler.cpp

[<ds...@us...>]

Revision: 5512
          http://sashimi.svn.sourceforge.net/sashimi/?rev=5512&view=rev
Author:   dshteyn
Date:     2011-09-23 23:24:14 +0000 (Fri, 23 Sep 2011)
Log Message:
-----------
support for Agilent QTOF mzML

Modified Paths:
--------------
    branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp

Modified: branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp
===================================================================
--- branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp	2011-09-23 23:20:07 UTC (rev 5511)
+++ branches/4-5/trans_proteomic_pipeline/src/Parsers/mzParser/saxmzmlhandler.cpp	2011-09-23 23:24:14 UTC (rev 5512)
@@ -276,9 +276,16 @@
 	} else if(!strcmp(name,"LTQ Velos") || !strcmp(accession,"MS:1000855")) {
 		m_instrument.model=name;
 
-	}	else if(!strcmp(name, "lowest observed m/z") || !strcmp(accession,"MS:1000528"))	{
+	} else if(!strcmp(name, "lowest observed m/z") || !strcmp(accession,"MS:1000528"))	{
 		spec->setLowMZ(atof(value));
 
+	} else if(!strcmp(name, "scan window lower limit") || !strcmp(accession,"MS:1000501"))    {
+		//TODO: should we also check the units???
+		spec->setLowMZ(atof(value));
+	} else if(!strcmp(name, "scan window upper limit") || !strcmp(accession,"MS:1000500"))    {
+		//TODO: should we also check the units???
+	    pec->setHighMZ(atof(value));
+
 	} else	if( !strcmp(name, "MS1 spectrum") || !strcmp(accession,"MS:1000579") ){
 		spec->setMSLevel(1);
 

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